Hi,
I get this error message "main database is too old or corrupt" after
updating from 0.9.5.
My original build didn't quite follow the approved pattern but worked:
113 >more RefDB/My_Notes.txt
"I built RefDB using the FreeBSD port of RefDB then added, from
sourceforge, the RefDB-Client module (by mistake) and then the
RefDB-perlmod module to translate PubMed references into RefDB style.
None of these contained the Text-Iconv-1.4 module which is necessary for
perlmod to function so I added that last from the meta-starter kit which
wasn't the order suggested in the meta-starter kit but it seems to work
anyway."
RefDB is installed on my machine and I'm the sole user.
Having read some previous posts I collected the following info-
refdbd -s -e 0 -l 7
pkg_info | grep sql
ll /usr/local/share/refdb/db/
refdb-bug
Any suggestions?
Bruce Hayward
mme-pc2132# refdbd -s -e 0 -l 7
dbi_driver_dir went to:
dbi is up using default driver dir
Available libdbi database drivers:
mysql
pgsql
sqlite
sqlite3
Requested libdbi driver found
Database directory:
/usr/local/share/refdb/db
application server started
share extended notes by default
use /tmp/refdbd_fifo9639 as fifo
server waiting n_max_fd=4
adding client 127.0.0.1 on fd 5
server waiting n_max_fd=5
parent removing client on fd 5
server waiting n_max_fd=4
try to read from client
serving client on fd 5 with protocol version 4
210-02-30-68
send pseudo-random string to client
viewstat -u medbha
dbi is up
localhost
medbha
sqlite
/usr/local/share/refdb/db
refdb
connected to database server using database:
refdb
main database is too old or corrupt
child finished client on fd 5
child exited with code 1
server waiting n_max_fd=4
109 >pkg_info | grep sql
mysql-client-4.1.15 Multithreaded SQL database (client)
postgresql-client-7.4.9 PostgreSQL database (client)
sqlite-2.8.17 An SQL database engine in a C library w/ Tcl wrapper
sqlite-3.2.8 An SQL database engine in a C library w/ Tcl wrapper
111 >ll /usr/local/share/refdb/db/
total 2516
-rw-r--r-- 1 root wheel 40K Aug 10 16:22 refdb
-rw-r--r-- 1 root wheel 2.2M Jan 24 09:44 refs
-rw-r--r-- 1 root wheel 171K Aug 23 15:02 test
And the refdb-bug output is:
FreeBSD mme-pc2132.leeds.ac.uk 5.4-STABLE FreeBSD 5.4-STABLE #1: Tue Aug
23 09:34:
31 BST 2005 medbha@xxxxxxxxxxxxxxxxxxxxxx:/usr/obj/usr/src/sys/BRUCE
i386
RefDB binaries and scripts in the path:
/usr/local/bin/refdbd
/usr/local/bin/refdba
/usr/local/bin/refdbc
/usr/local/bin/refdbib
/usr/local/bin/nmed2ris
/usr/local/bin/bib2ris
and their version numbers:
refdbd 0.9.6
refdba 0.9.6
refdbc 0.9.6
refdbib 0.9.6
nmed2ris 0.9.6
nmed2ris is
bib2ris 0.9.6
DSSSL engines in the path:
and their version numbers:
$REFDBLIB is /usr/local/share/refdb
global refdbd config file:
refdblib /usr/local/share/refdb
serverip localhost
dbsport
dbserver sqlite
dbpath /usr/local/share/refdb/db
port 9734
logfile /var/log/refdbd.log
logdest file
loglevel info
pidfile /var/run/refdbd.pid
remoteadmin f
remoteconnect f
keep_pnames t
keyword_scan t
db_encoding UNICODE
in_encoding ISO-8859-1
global refdba config file:
serverip 127.0.0.1
port 9734
pager less
passwd <protected>
logdest file
loglevel info
logfile /var/log/refdba.log
global refdbc config file:
serverip 127.0.0.1
port 9734
pager less
passwd <protected>
logdest file
loglevel info
logfile /var/log/refdbc.log
cssurl /usr/local/share/refdb/css/refdb.css
fromencoding ISO-8859-1
global refdbc config file (cgi):
refdblib /usr/local/share/refdb
serverip 127.0.0.1
port 9734
logfile /var/log/refdbcgi.log
logdest file
loglevel info
autokill 1800
global refdbib config file:
refdblib /usr/local/share/refdb
serverip 127.0.0.1
port 9734
pager less
passwd <protected>
outtype db31
logfile /var/log/refdbib.log
logdest file
loglevel info
stylespecdir .
ignore_missing f
global nmed2ris config file:
medsource PUBMED
outappend t
ignoretag t
logfile /var/log/nmed2ris.log
logdest file
loglevel info
global bib2ris config file:
refdblib /usr/local/share/refdb
logfile /var/log/bib2ris.log
logdest file
loglevel info
abbrevfirst t
forcejabbrev t
listsep ;
$HOME is /home/medbha
user refdba config file:
user refdba config file (hidden):
user refdbc config file:
user refdbc config file (hidden):
user refdbib config file:
user refdbib config file (hidden):
user nmed2ris config file:
user nmed2ris config file (hidden):
user bib2ris config file:
user bib2ris config file (hidden):
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