Dual boot machine backup startegy?

I now have BackupPC working great for our 5 machine home lan of mixed 
Mac, Linux and XP machines. The only kicker is I am not sure how to 
handle my personal desktop machine, which is a dual-boot XP/Linux machine.

When it is linux, I want it to backup using rsync, backing up /etc, 
/home, /usr/local, etc.

When it is up as XP, there is a samba share of documents I wat to grab.

Should I add it as 2 different hostname aliases, albeit the same ip, and 
let the failures fall where they may? Would that work?

Thanks,

Chris


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