unable to link, botch no matches, duplicate backups

Some strange things occured with my last full backup.

1) Looking over the full log, it shows that every share has been backed 
up twice. I see the first lines:
Running: /usr/bin/ssh -q -x -l backupuser server.strategicdata.com.au 
nice -n 19 sudo /usr/bin/rsync --server --sender --numeric-ids --perms 
--owner --group --devices --links --times --block-size=2048 --recursive 
--ignore-times . /var/www/
Xfer PIDs are now 27219
Got remote protocol 28
Xfer PIDs are now 27219,27220
  create d 755       0/0          71 .
  create d 755       0/0          23 ca
<snip all the rest of the lines about files in this share>

then a few thousand lines later I see:
Running: /usr/bin/ssh -q -x -l backupuser server.strategicdata.com.au 
nice -n 19 sudo /usr/bin/rsync --server --sender --numeric-ids --perms 
--owner --group --devices --links --times --block-size=2048 --recursive 
--ignore-times . /var/www/
Xfer PIDs are now 30658
Got remote protocol 28
Xfer PIDs are now 30658,30659
  create d 755       0/0          71 .
  same   d 755       0/0          23 ca
Unable to link 
/var/lib/backuppc/pc/sd01.mel.strategicdata.com.au/28/f%2fvar%2fwww/fca 
to /var/lib/backuppc/pc/sd01.mel.strategicdata.com.au/new//f%2fvar%2fwww/fca
<again, snip the rest of the lines>

However the second time around, for some of the files it says it is 
unable to link. For other files it doesn't complain. Later on it says:
Unable to link 
/var/lib/backuppc/pc/sd01.mel.strategicdata.com.au/28/f%2fvar%2fwww/fmunin/fmel.strategicdata.com.au 
to 
/var/lib/backuppc/pc/sd01.mel.strategicdata.com.au/new//f%2fvar%2fwww/fmunin/fmel.strategicdata.com.au
Unable to open 
/var/lib/backuppc/pc/sd01.mel.strategicdata.com.au/new/f%2fvar%2fwww/fmunin/fmel.strategicdata.com.au/findex.html 
for writing
Botch, no matches on 
/var/lib/backuppc/pc/sd01.mel.strategicdata.com.au/new/f%2fvar%2fwww/fmunin/fmel.strategicdata.com.au/findex.html 
(ab6df936710eed803e8280b5c006544f)
  pool     644   110/110        3915 
munin/mel.strategicdata.com.au/index.html

The backup says that it continued, but I can find files that are not 
included in the backup when I go to restore them.

Any ideas?

p.s
$ df -i /var/lib/
Filesystem            Inodes   IUsed   IFree IUse% Mounted on
/dev/sda7            726402944  518591 725884353    1% /var

p.s
This is the conf file:

$Conf{XferMethod} = 'rsync';

$Conf{RsyncShareName} = ['/var/local', '/var/www', '/var/vhosts', 
'/var/spool/cyrus', '/var/lib/cvs', '/var/cache/debconf', 
'/var/lib/dpkg', '/usr/local', '/opt', '/root', '/etc'];
#$Conf{BackupFilesExclude} = ['/var/local/sdaold', 'sdaold/'];
$Conf{BackupFilesExclude} = {'/var/local' => ['/sdaold']};

$Conf{RsyncClientCmd} = '$sshPath -q -x -l backupuser $host nice -n 19 
sudo $rsyncPath $argList+';
$Conf{RsyncClientRestoreCmd} = '$sshPath -q -x -l backupuser $host nice 
-n 19 sudo $rsyncPath $argList+';

# Do incremental backups every day, Full backups once a month
$Conf{FullPeriod} = 30.97;
$Conf{IncrPeriod} = 0.97;
# Keep the last 6 full monthly backups, then keep last 2 8monthly 
backups, and
# the last 2 16monthly backups. (So backups go back as far as 2.5 years)
$Conf{FullKeepCnt} = [6,0,0,0,2,2];
$Conf{IncrKeepCnt} = 31;
$Conf{IncrKeepCntMin} = 29;

--
Geoff Crompton
Debian System Administrator
Strategic Data
+61 3 9340 9000


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