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Subject: Fwd: [Jmol-users] future Jmol questions - msg#00020List: science.chemistry.blue-obeliskEgon ---------- Forwarded message ---------- From: Bob Hanson Date: Mon, Mar 17, 2008 at 1:54 PM Subject: [Jmol-users] future Jmol questions To: jmol-users-5NWGOfrQmneRv+LV9MX5uipxlwaOVQ5f@xxxxxxxxxxxxxxxx Jmol users, I'm ready to tackle two big Jmol feature requests: 1) automatic conversion 2D to 3D 2) minimal molecular mechanics support Personally, I don't see these as pushing Jmol in the wrong direction. (2) is necessary for (1), and (1) is a visualization issue. You may disagree. Feel free to chime in. My goal would be to add one or two additional optional packages. They would be part of the application but would not load into the applet unless used there. We know how to do that now, and it appears to be quite successful. I'm interested in a) What people think about this idea. b) What people think about the magnitude of the problem. c) Reasonable limitations we might implement. d) What people know about code that is already out there in any language that we could adopt. e) Who wants to help. Bob Hanson -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-users mailing list Jmol-users-5NWGOfrQmneRv+LV9MX5uipxlwaOVQ5f@xxxxxxxxxxxxxxxx https://lists.sourceforge.net/lists/listinfo/jmol-users -- ---- http://chem-bla-ics.blogspot.com/ ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ Thread at a glance:
Previous Message by Date: click to view message previewRe: Bioclipse piratedChristoph Steinbeck wrote: > I thought I'd bring this up on the Blue Obelisk list. While legally > probably in a grey zone, it is still interesting in terms of integrity > and respect for the achievements of others: > > A company called InfoCom, located in Arizona, advertises a product > called iBioTech , which by all evidence is identical with Bioclipse. > They say their iBioTech product has a plugin for chemoinformatics call > âbc_cdkâ (surprise :-)) and one called âbc_jmolâ for 3D > visualization. > > Read more at > http://www.steinbeck-molecular.de/steinblog/ The Software Freedom Law Center can help to clarify the situation and also support your claims (if there are any). Regards, Daniel -- Ist Ihr Browser Vista-kompatibel? Jetzt die neuesten Browser-Versionen downloaden: http://www.gmx.net/de/go/browser ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Blueobelisk-discuss mailing list Blueobelisk-discuss@xxxxxxxxxxxxxxxxxxxxx https://lists.sourceforge.net/lists/listinfo/blueobelisk-discuss Next Message by Date: click to view message previewChEBI user day coming in May 2008Dear colleagues, with our ChEBI database being one of the first open access data resources in Chemistry, I thought I might be allowed to spam this list regarding the first ChEBI user meeting coming up on May 19/20, 2008. Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary and ontology of molecular entities focused on âsmallâ chemical compounds hosted and maintained by the European Bioinformatics Institute (EBI). More, including registration information at http://www.steinbeck-molecular.de/steinblog/ Cheers, Christoph -- Dr. Christoph Steinbeck Head of Chemoinformatics and Metabolism European Bioinformatics Institute (EBI) Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD UK Phone +44 1223 49 2640 What is man but that lofty spirit - that sense of enterprise. ... Kirk, "I, Mudd," stardate 4513.3.. ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Blueobelisk-discuss mailing list Blueobelisk-discuss@xxxxxxxxxxxxxxxxxxxxx https://lists.sourceforge.net/lists/listinfo/blueobelisk-discuss Previous Message by Thread: click to view message previewBioclipse piratedDear all, I thought I'd bring this up on the Blue Obelisk list. While legally probably in a grey zone, it is still interesting in terms of integrity and respect for the achievements of others: A company called InfoCom, located in Arizona, advertises a product called iBioTech , which by all evidence is identical with Bioclipse. They say their iBioTech product has a plugin for chemoinformatics call âbc_cdkâ (surprise :-)) and one called âbc_jmolâ for 3D visualization. Read more at http://www.steinbeck-molecular.de/steinblog/ Cheers, Chris -- Dr. Christoph Steinbeck Head of Chemoinformatics and Metabolism European Bioinformatics Institute (EBI) Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD UK Phone +44 1223 49 2640 What is man but that lofty spirit - that sense of enterprise. ... Kirk, "I, Mudd," stardate 4513.3.. ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Blueobelisk-discuss mailing list Blueobelisk-discuss@xxxxxxxxxxxxxxxxxxxxx https://lists.sourceforge.net/lists/listinfo/blueobelisk-discuss Next Message by Thread: click to view message previewChEBI user day coming in May 2008Dear colleagues, with our ChEBI database being one of the first open access data resources in Chemistry, I thought I might be allowed to spam this list regarding the first ChEBI user meeting coming up on May 19/20, 2008. Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary and ontology of molecular entities focused on âsmallâ chemical compounds hosted and maintained by the European Bioinformatics Institute (EBI). More, including registration information at http://www.steinbeck-molecular.de/steinblog/ Cheers, Christoph -- Dr. Christoph Steinbeck Head of Chemoinformatics and Metabolism European Bioinformatics Institute (EBI) Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD UK Phone +44 1223 49 2640 What is man but that lofty spirit - that sense of enterprise. ... Kirk, "I, Mudd," stardate 4513.3.. ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Blueobelisk-discuss mailing list Blueobelisk-discuss@xxxxxxxxxxxxxxxxxxxxx https://lists.sourceforge.net/lists/listinfo/blueobelisk-discuss Loading Comments...
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