Please take our Survey
logo       

Choosing A Webhost:
A web hosting service is a type of Internet hosting service that allows individuals and organizations to provide their own website accessible via the World Wide Web. Web hosts are companies that provide space on a server they own for use by their clients as well as providing Internet connectivity, typically in a data center. Web hosts can also provide data center space and connectivity to the Internet for servers they do not own to be located in their data center, called colocation. more...

Rgraphviz install issues: msg#00291

science.biology.informatics.conductor

Subject: Rgraphviz install issues

Hi -

R1.9.1; OSX 10.3.5; Dev Tools etc install.

I have installed, via darwinports, graphviz (v1.16) running in x11 (I also have the standalone aqua app...) Having done that, I have tried to install RGraphviz from the Bioconductor suite via the x11 route to R, as Rgraphviz needs graphviz in the x11 environment (I think).

First, I used the Bioconductor script

getBioC("graph")
which installed everthing successfully except RGraphviz and Guuid....

Assuming that the build of RGraphviz would require the library path for graphviz installed by darwinports, I tried this previously posted remedy to install RGraphviz

dyn092203:~ apb$ export LD_LIBRARY_PATH=/opt/local/lib/graphviz
dyn092203:~ apb$ sudo R CMD INSTALL /Users/apb/Rgraphviz_1.4.0.tar.gz
Password:
* Installing *source* package 'Rgraphviz' ...
** libs
gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include `dotneato-config --cflags` -I/usr/local/include -Wall -fno-common -g -O2 -c Rgraphviz.c -o Rgraphviz.o
In file included from /opt/local/include/graphviz/render.h:45,
from common.h:21,
from Rgraphviz.c:1:
/opt/local/include/graphviz/macros.h:34:1: warning: "NEW" redefined
In file included from common.h:13,
from Rgraphviz.c:1:
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:129:1: warning: this is the location of the previous definition
Rgraphviz.c: In function `Rgraphviz_agopen':
Rgraphviz.c:244: warning: implicit declaration of function `GD_gvc'
Rgraphviz.c:244: error: invalid lvalue in assignment
make: *** [Rgraphviz.o] Error 1
ERROR: compilation failed for package 'Rgraphviz'
** Removing '/Library/Frameworks/R.framework/Versions/1.9.1/Resources/library/ Rgraphviz'

Clearly, something else is missing in my effort..... Any advice would be appreciated.
Cheers
andrew
------------------------------------------------------------------------ ---------
Dr. Andrew Beckerman
Department of Animal and Plant Sciences, University of Sheffield,
Alfred Denny Building, Western Bank, Sheffield S10 2TN, UK
ph +44 (0)114 222 0026; fx +44 (0)114 222 0002
http://www.shef.ac.uk/beckslab
------------------------------------------------------------------------ ----------


<Prev in Thread] Current Thread [Next in Thread>
Google Custom Search

Recently Viewed:
qnx.openqnx.dev...    gcc.libstdc++.c...    solaris.opensol...    information-ret...    misc.misterhous...    web.catalyst.ge...    apache.webservi...    redhat.release....    hardware.lirc/2...    kernel.autofs/2...    technology.sust...    linux.vdr/2003-...    editors.lyx.gen...    org.user-groups...    netbsd.devel.pk...    xdg.devel/2004-...    version-control...    jakarta.slide.d...    debian.packages...    creativecommons...    ports.ppc.embed...    bug-tracking.bu...   
Home | blog view | USPTO Patent Archive | advertise | OSDir is an inevitable website. super tiny logo

Free Magazines

Cisco News
Receive a free quarterly e-newsletter with exclusive articles on how Cisco IT uses its own products and solutions to enable the business.
subscribe

Systems Management News, the newspaper for IT systems administration and data center managers! Each issue of Systems Management News is chock-full of news and analysis to help you understand what's happening in your field.
subscribe

The Enterprise Newsweekly eWeek is the essential technology information source for builders of e-business.
subscribe

Oracle Magazine Oracle Magazine contains technology strategy articles, sample code, tips, Oracle and partner news, how to articles for developers and DBAs, and more. Oracle (NASDAQ: ORCL) is the world's largest enterprise software company.
subscribe

Total Telecom Total Telecom is "The Economist of the communications industry".
subscribe