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science.biology.informatics.conductor (thread)
Re: downstream analysis of differentially expressed genes
downstream analysis of differentially expressed genes
where to find the document of 'multtest.intro"
Re: where to find the document of 'multtest.intro"
Normalization of Intensities
read.celfile
Re: read.celfile
package hgu95av2cdf for R 1.9.0
Re: package hgu95av2cdf for R 1.9.0
Re: Classification question(Tom R. Fahland)
RE: Re: Classification question(Tom R. Fahland)
algorithms and explanations
Re: Difficulty in getting a boxplot display of nomralized datausing affy
Difficulty in getting a boxplot display of nomralized data using affy
Re: Difficulty in getting a boxplot display of nomralized data using affy
Re: Difficulty in getting a boxplot display of nomralized data using affy
HOMEDRIVE in R and maImage() troubles
Re: HOMEDRIVE in R and maImage() troubles
RE: HOMEDRIVE in R and maImage() troubles
gcrma 1.0.0 vs 1.0.6
Gene Logic dilution series, hgua95 identical values
Installation of package affy failed
Problems with loading Rgraphviz library
Re: Problems with loading Rgraphviz library
Design/contrast matrix for limma
RE: Design/contrast matrix for limma
RE: Design/contrast matrix for limma
Irizarry's paper on Stochastic Models - R-codes
RE: how deal with multiplicate affy probes?
Re: how deal with multiplicate affy probes?
A single linear model for all
Bug in affy library
GO & KEGG
Re: GO & KEGG
Re: GO & KEGG
venn diagram
Re: venn diagram
RE: venn diagram
RE: venn diagram
RE: venn diagram
RE: RE: venn diagram
venn diagram in R
RE: venn diagram in R
RE: venn diagram in R
RE: venn diagram in R
FW: venn diagram in R
Question on afy/gcrma probe indexes
Re: Question on afy/gcrma probe indexes
RE: Question on afy/gcrma probe indexes
Re: Question on afy/gcrma probe indexes
RE: Question on afy/gcrma probe indexes
hierarchical clustering of chips
limma publications
rae230bprobe library?
spotTypes function not available in limma?
Re: spotTypes function not available in limma?
Re: spotTypes function not available in limma?
SAM and siggenes packages
Re: SAM and siggenes packages
Re: SAM and siggenes packages
Re: SAM and siggenes packages
Re: SAM and siggenes packages
Re: SAM and siggenes packages
Dealing with artifacts on Affy chips.
Re: Bioconductor Digest, Vol 14, Issue 39
Re: Bioconductor Digest, Vol 14, Issue 38
getting MAS for a large affy object
Re: getting MAS for a large affy object
Re: Bioconductor Digest, Vol 14, Issue 37
Affy Bioconductor with Rat230_2 chips
RE: Affy Bioconductor with Rat230_2 chips
combine part of U133A and U95Av2 affy chip
GO annotation problem
Re: GO annotation problem
when to call pmcorrect in affy
Re: when to call pmcorrect in affy
just.gcrma and gcrma
Re: just.gcrma and gcrma
tutorial available? [forwarded message]
Re: tutorial available? [forwarded message]
Published studies assessing process variability
subtractmm problem in "affy"
Re: subtractmm problem in "affy"
Re: subtractmm problem in "affy"
Re: subtractmm problem in "affy"
problem with RdbiPgsql and R
Re: problem with RdbiPgsql and R
Re: problem with RdbiPgsql and R
CDF environment for U133_X3P
Re: CDF environment for U133_X3P
Re: CDF environment for U133_X3P
limma - arrays with different GAL files
RE: limma - arrays with different GAL files
Help
[JOB] Toxicogenomics Statistician
[JOB] Computational Statistician
Affymetrix Tag3
Re: Affymetrix Tag3
rae230b metadata
Newly available Affy data set
limma and paired data
Re: limma and paired data
programming problem: running many ANOVAs
Re: programming problem: running many ANOVAs
justRMA/justGCRMA
limma - background correct method=none
Re: limma - background correct method=none
RE: limma - background correct method=none
limma - background correct method=none
RE: limma - background correct method=none
Multiple fields in Imagene data files
Re: Multiple fields in Imagene data files
Multiple fields in Imagene data files
Input of Spot output directly into marrayInput
Re: Input of Spot output directly into marrayInput
Re: Bioconductor Digest, Vol 14, Issue 24
limma - dupcor.series
Re: limma - dupcor.series
RE: limma - dupcor.series
RE: limma - dupcor.series
Problem with affy
Re: Problem with affy
General question about distribution spot
Genbank to Unigene IDs partial help!
Genbank to Unigene IDs
Re: Genbank to Unigene IDs
RE: Genbank to Unigene IDs
RE: Genbank to Unigene IDs
RE: Genbank to Unigene IDs
RE: Genbank to Unigene IDs
RE: Genbank to Unigene IDs
RE: Genbank to Unigene IDs
Re: Genbank to Unigene IDs
Re: Genbank to Unigene IDs
Re: Genbank to Unigene IDs
Re: Genbank to Unigene IDs
Re: Genbank to Unigene IDs
Re: Genbank to Unigene IDs
RE: Genbank to Unigene IDs
Re: Genbank to Unigene IDs
RE: Genbank to Unigene IDs
Re: Genbank to Unigene IDs
RE: Genbank to Unigene IDs
Question about Microarray before/after treatment, Paired Analysis
Release 1.4 information
repositories2
Re: repositories2
Re: repositories2
Re: repositories2
problems with Greg's installer script
RE: problems with Greg's installer script
Two rma questions
Re: Two rma questions
Re: Two rma questions
Re: Two rma questions
Re: Two rma questions
Makefile for installing all available packages
Re: Makefile for installing all available packages
Problem installing Rgraphviz
Re: Problem installing Rgraphviz
Re: Problem installing Rgraphviz
Re: Problem installing Rgraphviz
Re: recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9
recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9
Re: recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9y
Re: recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9
Re: recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9
Re: recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9
Re: recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9
Re: recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9
Follow-up: recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9
Problems with rma/justRMA and gcrma/justGCRMA
RMA vignette
RE: RMA vignette
Re: RMA vignette
Reading SMD datasets
Re: Reading SMD datasets
Re: [altirriba@xxxxxxxxxxx: Design in factDesign] (fwd)
help with genefinder/geneplotter
[PATCH] apparent bug in RdbiPgSQL (logicals always false)
Re: [PATCH] apparent bug in RdbiPgSQL (logicals always false)
Help with justRMA in affy package
Re: Help with justRMA in affy package
simpleaffy qc.stats error on mouse4302 arrays
simpleaffy qc.stats error on mouse4302 arrays
Recent changes to Bioconductor packages
Recent changes to Bioconductor packages
Recent changes to Bioconductor packages
gcrma.bg.transformation missing in gcrma 1.0.6
gcrma.1.0.0 vs gcrma.1.0.6 vs justGCRMA.1.0.6
Re: gcrma.1.0.0 vs gcrma.1.0.6 vs justGCRMA.1.0.6
Boston Bioconductor Training Course Dates: 28-29 June 2004
rlm function
bioconductor keywords?
limma--lm.fit and lm.series
GO problems with annaffy
Re: GO problems with annaffy
RE:[altirriba-PkbjNfxxIAQR9CjQ232wDgYk9fpHcFibA8ag9gvmjvSgSH77DkWprQ@xxxxxxxxxxxxxxxx (fwd)
Re: [altirriba@xxxxxxxxxxx: Design in factDesign] (fwd)
Re: [altirriba@xxxxxxxxxxx: Design in factDesign] (fwd)
phenoData
Re: phenoData
Re: phenoData
Re: phenoData
[BioC] possible change
[BioC] Help in analysis
[BioC] ImaGene data into limma
Re: ImaGene data into limma
[altirriba-PkbjNfxxIATkmIeZ5/BlKy1kmjuqtNg2@xxxxxxxxxxxxxxxx Design in factDesign] (fwd)
[BioC] limma reading genpix files
Re: [BioC] limma reading genpix files
Re: limma reading genpix files
Re: limma reading genpix files
Re: limma reading genpix files
[BioC] Array Comparative genome hybridization (CGH) linked to gene expression micro-arrays
[BioC] AFFY PLIER ALGORITHM
Re: AFFY PLIER ALGORITHM
[BioC] justGCRMA: Argument is missing, with no default
Re: [BioC] justGCRMA: Argument is missing, with no default
Re: [BioC] justGCRMA: Argument is missing, with no default
[BioC] Limma
Re: [BioC] Limma
[BioC] Limma
[BioC] version information
Re: [BioC] version information
[BioC] limma and nested factors
Re: [BioC] limma and nested factors
RE: [BioC] limma and nested factors
RE: [BioC] limma and nested factors
[BioC] Design in factDesign
[BioC] robust linear model in anovas
[BioC] Opinions on LIMaS
[BioC] help with packages
Re: [BioC] help with packages
Re: [BioC] help with packages
Re: [BioC] help with packages
[BioC] rma() error
[BioC] memory usage ReadAffy() and probe level information
Re: [BioC] memory usage ReadAffy() and probe level information
RE: [BioC] memory usage ReadAffy() and probe level information
RE: [BioC] memory usage ReadAffy() and probe level information
[BioC] Background correction - limma
Re: [BioC] Background correction - limma
RE: [BioC] simpleaffy
Re: [BioC] marrayInput: different gal files for the same experiment
[BioC] Cannot find hgu133aprobe package
RE: [BioC] Cannot find hgu133aprobe package
RE: [BioC] Cannot find hgu133aprobe package
[BioC] no codes for the screenshots?
Re: [BioC] no codes for the screenshots?
[BioC] Re: [R] marrayNorm package (fwd)
FW: [BioC] Re: [R] marrayNorm package (fwd)