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Re: [BioPython] Installation problems: msg#00022

python.bio.general

Subject: Re: [BioPython] Installation problems


Try:

python setup.py build

Make sure you have 2.2 at least. 2.3 is better.

Cheers,

Iddo

Walter Ash wrote:

When I attempt to build biopython using setup.py I get syntax errors that don't make any sense. My python distribution appears to be working normally for all other applications and scripts. I'm wondering if anybody else has encountered this and resolved it?

# ./setup.py build
./setup.py: line 21: Distutils based setup script for Biopython.

[help and version info snipped]

: No such file or directory
./setup.py: line 26: syntax error near unexpected token `('
./setup.py: line 26: `if sys.version_info[:2] < (2, 2):'

-----------------

There is a very long delay between the "no such file or directory" error and the syntax error message. I'm using redhat enterprise 3 (Red Hat Enterprise Linux WS release 3 (Taroon Update 3)) with the following kernel:

Linux blahblah.ucalgary.ca 2.4.21-20.ELsmp #1 SMP Wed Aug 18 20:46:40 EDT 2004 i686 i686 i386 GNU/Linux

and this python version:

Python 2.2.3 (#1, Aug 8 2003, 08:44:02)
[GCC 3.2.3 20030502 (Red Hat Linux 3.2.3-13)] on linux2
Type "help", "copyright", "credits" or "license" for more information.



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--
Iddo Friedberg, Ph.D.
The Burnham Institute
10901 North Torrey Pines Road
La Jolla, CA 92037 USA
T: (858) 646 3100 x3516
F: (858) 713 9930
http://ffas.ljcrf.edu/~iddo

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BioPython mailing list - BioPython@xxxxxxxxxxxxx
http://biopython.org/mailman/listinfo/biopython



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