python.bio.devel (thread)

test_ParserSupport.py, Peter
Re: Online access, Bio.PubMed & Bio.GenBank vs Bio.Entrez, Peter
[Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing, bugzilla-daemon
about the SeqRecord and SeqFeature classes, Jose Blanca
- Re: about the SeqRecord and SeqFeature classes, Peter
[Bug 2592] New: numpy migration for Bio.PDB.Vector, bugzilla-daemon
BOSC 2008 presentation, Peter
[Bug 2591] New: GenBank files misparsed for long organism names, bugzilla-daemon
- [Bug 2591] GenBank files misparsed for long organism names, bugzilla-daemon
Re: Numeric/numpy, Peter Cock
- Re: Numeric/numpy, Brad Chapman
- Re: Numeric/numpy, Michiel de Hoon
  - Re: Numeric/numpy, Peter
[Bug 2251] [PATCH] NumPy support for BioPython, bugzilla-daemon
[Bug 2589] New: Errors in running tests in 1.48, bugzilla-daemon
- [Bug 2589] Errors in running tests in 1.48, bugzilla-daemon
- [Bug 2589] Errors in running tests in 1.48, bugzilla-daemon
- [Bug 2589] Errors in running tests in 1.48, bugzilla-daemon
Numeric/numpy - Bio/Affy/CelFile.py, Peter Cock
- Re: Numeric/numpy - Bio/Affy/CelFile.py, Michiel de Hoon
  - Re: Numeric/numpy - Bio/Affy/CelFile.py, Peter Cock
    - Re: Numeric/numpy - Bio/Affy/CelFile.py, Michiel de Hoon
[Bug 2588] New: tutorial blast section uses undefined variables, bugzilla-daemon
- [Bug 2588] tutorial blast section uses undefined variables, bugzilla-daemon
test_MarkovModel.py and Numeric/numpy work?, Peter
- Re: test_MarkovModel.py and Numeric/numpy work?, Michiel de Hoon
  - Re: test_MarkovModel.py and Numeric/numpy work?, Peter
Re: Modules to be removed from Biopython, Peter
- Re: Modules to be removed from Biopython, Peter
  - Re: Modules to be removed from Biopython, Peter
    - Re: Modules to be removed from Biopython, Michiel de Hoon
    - Re: Modules to be removed from Biopython, Peter
    - Re: Modules to be removed from Biopython, Michiel de Hoon
    - Re: Modules to be removed from Biopython, Peter
    - Re: Modules to be removed from Biopython, Peter
    - Re: Modules to be removed from Biopython, Brad Chapman
    - Re: Modules to be removed from Biopython, Leighton Pritchard
[Bug 2480] Local BLAST fails: Spaces in Windows file-path values, bugzilla-daemon
- [Bug 2480] Local BLAST fails: Spaces in Windows file-path values, bugzilla-daemon
Author of "restriction tutorial"?, Sebastian Bassi
- Re: Author of "restriction tutorial"?, Peter
Cleaning up Bio.SeqUtils, Peter
Numpy conversion, Michiel de Hoon
- Re: Numpy conversion, Peter
  - Re: Numpy conversion, Michiel de Hoon
NumPy conversion / Bio.KDTree / Bio.Cluster., Michiel de Hoon
- Re: NumPy conversion / Bio.KDTree / Bio.Cluster., Brad Chapman
  - Re: NumPy conversion / Bio.KDTree / Bio.Cluster., Michiel de Hoon
- Re: NumPy conversion / Bio.KDTree / Bio.Cluster., Michiel de Hoon
[Bug 2586] New: New version of MeltingTemp.py, bugzilla-daemon
- [Bug 2586] New version of MeltingTemp.py, bugzilla-daemon
- [Bug 2586] New version of MeltingTemp.py, bugzilla-daemon
[Bug 2585] New: Error in Bio.SeqUtils.apply_on_multi_fasta, bugzilla-daemon
- [Bug 2585] Error in Bio.SeqUtils.apply_on_multi_fasta, bugzilla-daemon
- [Bug 2585] Error in Bio.SeqUtils.apply_on_multi_fasta, bugzilla-daemon
- [Bug 2585] Error in Bio.SeqUtils.apply_on_multi_fasta, bugzilla-daemon
- [Bug 2585] Error in Bio.SeqUtils.apply_on_multi_fasta, bugzilla-daemon
Bio.KDTree, Michiel de Hoon
Bio.Affy, Michiel de Hoon
NumPy conversion roadmap, Michiel de Hoon
- NumPy conversion roadmap, Brad Chapman
  - Re: NumPy conversion roadmap, Michiel de Hoon
    - Re: NumPy conversion roadmap, Brad Chapman
[Bug 2583] New: small bug in NCBIXML.py, bugzilla-daemon
- [Bug 2583] small bug in NCBIXML.py, bugzilla-daemon
- [Bug 2583] small bug in NCBIXML.py, bugzilla-daemon
BioPythonGUI: Graphical User Interface for BioPython, Marshall Hampton
- BioPythonGUI: Graphical User Interface for BioPython, Marshall Hampton
  - Re: BioPythonGUI: Graphical User Interface for BioPython, Wubin Qu
Biopython 1.48 released, Peter
Re: [BioPython] BioPythonGUI: Graphical User Interface for BioPython, Peter Cock
- Re: [BioPython] BioPythonGUI: Graphical User Interface for BioPython, Wubin Qu
test_SVDSuperimposer.py, Peter Cock
- Re: test_SVDSuperimposer.py, Michiel de Hoon
  - Re: test_SVDSuperimposer.py, Peter Cock
    - Re: test_SVDSuperimposer.py, Michiel de Hoon
    - Re: test_SVDSuperimposer.py, Peter Cock
    - Re: test_SVDSuperimposer.py, Michiel de Hoon
New line issues in the source zip or tarballs, Peter
- Re: New line issues in the source zip or tarballs, Tiago Antão
  - Re: New line issues in the source zip or tarballs, Peter
Nexus issue on Windows with Python 2.3, Peter
- Re: Nexus issue on Windows with Python 2.3, Peter
  - Re: Nexus issue on Windows with Python 2.3, Frank Kauff
CVS freeze for Biopython 1.48, Peter
- Re: CVS freeze for Biopython 1.48, Peter
[Bug 2578] New: The GenBank SeqRecord parser does not record module type or if circular, bugzilla-daemon
- [Bug 2578] The GenBank SeqRecord parser does not record module type or if circular, bugzilla-daemon
- [Bug 2578] The GenBank SeqRecord parser does not record molecule type or if circular, bugzilla-daemon
Preparing for Biopython 1.48, Peter
- Re: Preparing for Biopython 1.48, Tiago Antão
  - Re: Preparing for Biopython 1.48, Jared Flatow
    - Re: Preparing for Biopython 1.48, Peter
    - Re: Preparing for Biopython 1.48, Tiago Antão
    - Re: Preparing for Biopython 1.48, Peter
    - Re: Preparing for Biopython 1.48, Tiago Antão
[Bug 2543] Bio.Nexus.Trees can't handle named ancestors, bugzilla-daemon
- [Bug 2543] Bio.Nexus.Trees can't handle named ancestors, bugzilla-daemon
- [Bug 2543] Bio.Nexus.Trees can't handle named ancestors, bugzilla-daemon