python.bio.devel (thread)

[Bug 2351] Make Seq more like a string, even subclass string?, bugzilla-daemon
- [Bug 2351] Make Seq more like a string, even subclass string?, bugzilla-daemon
- [Bug 2351] Make Seq more like a string, even subclass string?, bugzilla-daemon
Biopython SVN Transition OK'd, Chris Lasher
- Re: Biopython SVN Transition, Peter
  - Re: Biopython SVN Transition, Michiel De Hoon
  - Re: Biopython SVN Transition, Chris Lasher
Re: Removing Bio.Kabat, Michiel De Hoon
BioRegistry, Bio.db, Peter
- Re: BioRegistry, Bio.db, Peter
[Bug 2390] New: Error importing Swiss Prot in BioSQL, bugzilla-daemon
- [Bug 2390] Error importing Swiss Prot in BioSQL, bugzilla-daemon
- [Bug 2390] Error importing Swiss Prot in BioSQL, bugzilla-daemon
- [Bug 2390] Error importing Swiss Prot in BioSQL, bugzilla-daemon
- [Bug 2390] Error importing Swiss Prot in BioSQL, bugzilla-daemon
- [Bug 2390] Error importing Swiss Prot in BioSQL, bugzilla-daemon
Non-ASCII character in PopGen documentation, Michiel De Hoon
- Re: Non-ASCII character in PopGen documentation, Tiago Antao
Biopython release 1.44 ready, Michiel De Hoon
- Re: Biopython release 1.44 ready, Peter
  - Re: Biopython release 1.44 ready, Michiel De Hoon
- Re: Biopython release 1.44 ready, Tiago Antao
  - Re: Biopython release 1.44 ready, Peter
  - Re: Biopython release 1.44 ready, Michiel De Hoon
  - Re: Biopython release 1.44 ready, Michiel De Hoon
- Re: mxTextTools optional?, Peter
  - Re: mxTextTools optional?, Michiel De Hoon
CVS freeze, Michiel De Hoon
- Re: CVS freeze, Bruce Southey
  - Re: DE line in SwissProt/TrEMBL format, Peter
  - Re: CVS freeze, Michiel De Hoon
[Bug 2374] Updated Bio.lcc code., bugzilla-daemon
- [Bug 2374] Updated Bio.lcc code., bugzilla-daemon
- [Bug 2374] Updated Bio.lcc code., bugzilla-daemon
- [Bug 2374] Updated Bio.lcc code., bugzilla-daemon
Removing deprecated functionality, Michiel De Hoon
- Re: Removing deprecated functionality, Peter
[Bug 2386] New: Bio.Seq.Seq and MutableSeq count() method only works for single residues, bugzilla-daemon
- [Bug 2386] Bio.Seq.Seq and MutableSeq count() method only works for single residues, bugzilla-daemon
- [Bug 2386] Bio.Seq.Seq and MutableSeq count() method only works for single residues, bugzilla-daemon
- [Bug 2386] Bio.Seq.Seq and MutableSeq count() method only works for single residues, bugzilla-daemon
- [Bug 2386] Bio.Seq.Seq and MutableSeq count() method only works for single residues, bugzilla-daemon
- [Bug 2386] Bio.Seq.Seq and MutableSeq count() method only works for single residues, bugzilla-daemon
BioSQL documentation, Peter
[Bug 2382] New: Generic FASTA parser, bugzilla-daemon
- [Bug 2382] Generic FASTA parser, bugzilla-daemon
- [Bug 2382] Generic FASTA parser, bugzilla-daemon
- [Bug 2382] Generic FASTA parser, bugzilla-daemon
- [Bug 2382] Generic FASTA parser, bugzilla-daemon
- [Bug 2382] Generic FASTA parser, bugzilla-daemon
- [Bug 2382] Generic FASTA parser, bugzilla-daemon
- [Bug 2382] Generic FASTA parser, bugzilla-daemon
- [Bug 2382] Generic FASTA parser, bugzilla-daemon
- [Bug 2382] Generic FASTA parser, bugzilla-daemon
- [Bug 2382] Generic Roche or GSFlex "FASTA" parser, bugzilla-daemon
- [Bug 2382] Generic Roche or GSFlex "FASTA" parser, bugzilla-daemon
- [Bug 2382] Generic Roche or GSFlex "FASTA" parser, bugzilla-daemon
[Bug 2381] New: translate and transcibe method for the the Seq object (in Bio.Seq), bugzilla-daemon
- [Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
- [Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
- [Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
- [Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
- [Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
- [Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
- [Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
- [Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
  - Re: [Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), Howard Salis
    - Re: [Bug 2381] back-translate, Peter
    - Re: [Bug 2381] back-translate, Howard Salis
    - Re: [Bug 2381] back-translate, Peter
- [Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
[Bug 2380] New: Bio.Nexus is adding "?" and "-" to Bio.Data.IUPACData.ambiguous_dna_values, bugzilla-daemon
Biopython status, Jared Flatow
- Re: Biopython status, Sebastian Bassi
- Re: Biopython status, Michiel De Hoon
  - Re: Biopython status, bartek wilczynski
- Re: Biopython status, Peter
  - Re: Biopython status, Jared Flatow
    - Re: CVS to SVN, Peter
    - Re: CVS to SVN, Jared Flatow
    - Re: CVS to SVN, Peter
    - Re: CVS to SVN, Michiel De Hoon
    - Re: 454 GSFlex quality score files, Peter
    - Re: 454 GSFlex quality score files, Jared Flatow
    - Re: 454 GSFlex quality score files, Peter
    - Re: 454 GSFlex quality score files, Jared Flatow
    - Re: 454 GSFlex quality score files, Peter
    - Re: SeqRecord to file format as string, Peter
    - Re: SeqRecord to file format as string, Michiel De Hoon
[Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq, bugzilla-daemon
- [Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq, bugzilla-daemon
- [Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq, bugzilla-daemon
- [Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq, bugzilla-daemon
- [Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq, bugzilla-daemon
- [Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq, bugzilla-daemon
Precompute database information, Fernando
Database into variables, Fernando
Revised tutorial, Peter
- Re: Revised tutorial, Sebastian Bassi
function enumerate in Bio/GFF/GenericTools.py; Bio/DocSQL.py, Michiel De Hoon
translate, mhobbs_of_lawson
- Re: translate, Peter
  - Re: translate, Matthew Hobbs
Output of Biopython tests, Michiel De Hoon
- Re: Output of Biopython tests, Peter
  - Re: Output of Biopython tests, Michiel De Hoon
    - Re: Output of Biopython tests, Michiel De Hoon
    - Re: Output of Biopython tests, Peter
Configuration files, Tiago Antão
- Re: Configuration files, Peter
  - Re: Configuration files, Tiago Antão
[Bug 2174] FDist Support in BioPython, bugzilla-daemon
[Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
- [Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
- [Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
- [Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
- [Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
- [Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
- [Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
- [Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
- [Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
Coalescent code, Tiago Antão
- Re: Coalescent code, Peter
  - Re: Coalescent code, Tiago Antão
    - Re: Coalescent code, Michiel De Hoon
Re: Statistics code, Ralph Haygood
- Re: Statistics code, Tiago Antão
Re: [BioPython] Bio.MultiProc, Michiel De Hoon
- Re: [BioPython] Bio.MultiProc, Iddo Friedberg
  - Re: Bio.MultiProc / Bio.FormatIO, Peter
  - Re: [BioPython] Bio.MultiProc, Michiel De Hoon
[Bug 2362] test_copen fails on Windows XP as tries os.fork(), bugzilla-daemon