python.bio.devel (date)

October 31, 2007

[Bug 2351] Make Seq more like a string, even subclass string?, bugzilla-daemon
Re: Biopython SVN Transition, Chris Lasher
[Bug 2351] Make Seq more like a string, even subclass string?, bugzilla-daemon
Re: Biopython SVN Transition, Michiel De Hoon

October 30, 2007

Re: BioRegistry, Bio.db, Peter
[Bug 2390] Error importing Swiss Prot in BioSQL, bugzilla-daemon
[Bug 2351] Make Seq more like a string, even subclass string?, bugzilla-daemon
[Bug 2386] Bio.Seq.Seq and MutableSeq count() method only works for single residues, bugzilla-daemon
Re: Biopython SVN Transition, Peter
[Bug 2386] Bio.Seq.Seq and MutableSeq count() method only works for single residues, bugzilla-daemon
[Bug 2390] Error importing Swiss Prot in BioSQL, bugzilla-daemon
[Bug 2386] Bio.Seq.Seq and MutableSeq count() method only works for single residues, bugzilla-daemon
[Bug 2390] Error importing Swiss Prot in BioSQL, bugzilla-daemon
[Bug 2386] Bio.Seq.Seq and MutableSeq count() method only works for single residues, bugzilla-daemon
Biopython SVN Transition OK'd, Chris Lasher
[Bug 2386] Bio.Seq.Seq and MutableSeq count() method only works for single residues, bugzilla-daemon
Re: Removing Bio.Kabat, Michiel De Hoon

October 29, 2007

Re: Removing deprecated functionality, Peter
BioRegistry, Bio.db, Peter
[Bug 2390] Error importing Swiss Prot in BioSQL, bugzilla-daemon
[Bug 2390] Error importing Swiss Prot in BioSQL, bugzilla-daemon
[Bug 2390] New: Error importing Swiss Prot in BioSQL, bugzilla-daemon
Re: mxTextTools optional?, Michiel De Hoon
Re: Biopython release 1.44 ready, Michiel De Hoon
Re: Biopython release 1.44 ready, Michiel De Hoon
Re: Biopython release 1.44 ready, Michiel De Hoon

October 28, 2007

Re: mxTextTools optional?, Peter
Re: Biopython release 1.44 ready, Peter
Re: Biopython release 1.44 ready, Tiago Antao
Re: Non-ASCII character in PopGen documentation, Tiago Antao
Re: Biopython release 1.44 ready, Peter
Non-ASCII character in PopGen documentation, Michiel De Hoon
Biopython release 1.44 ready, Michiel De Hoon

October 27, 2007

Re: CVS freeze, Michiel De Hoon

October 26, 2007

Re: DE line in SwissProt/TrEMBL format, Peter
Re: CVS freeze, Bruce Southey
CVS freeze, Michiel De Hoon

October 25, 2007

[Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
[Bug 2374] Updated Bio.lcc code., bugzilla-daemon
[Bug 2374] Updated Bio.lcc code., bugzilla-daemon
[Bug 2374] Updated Bio.lcc code., bugzilla-daemon
[Bug 2374] Updated Bio.lcc code., bugzilla-daemon
[Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon

October 24, 2007

Removing deprecated functionality, Michiel De Hoon

October 22, 2007

[Bug 2386] New: Bio.Seq.Seq and MutableSeq count() method only works for single residues, bugzilla-daemon
Re: [Bug 2381] back-translate, Peter
[Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq, bugzilla-daemon

October 19, 2007

Re: [Bug 2381] back-translate, Howard Salis
Re: [Bug 2381] back-translate, Peter
[Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
Re: [Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), Howard Salis
[Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon

October 18, 2007

BioSQL documentation, Peter
[Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
[Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
[Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
[Bug 2382] Generic Roche or GSFlex "FASTA" parser, bugzilla-daemon

October 17, 2007

[Bug 2382] Generic Roche or GSFlex "FASTA" parser, bugzilla-daemon
[Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq, bugzilla-daemon
[Bug 2382] Generic Roche or GSFlex "FASTA" parser, bugzilla-daemon
[Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
[Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq, bugzilla-daemon
Re: SeqRecord to file format as string, Michiel De Hoon
Re: CVS to SVN, Michiel De Hoon
[Bug 2382] Generic FASTA parser, bugzilla-daemon
Re: SeqRecord to file format as string, Peter
[Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon

October 16, 2007

[Bug 2382] Generic FASTA parser, bugzilla-daemon
[Bug 2382] Generic FASTA parser, bugzilla-daemon
[Bug 2382] Generic FASTA parser, bugzilla-daemon
[Bug 2382] Generic FASTA parser, bugzilla-daemon
[Bug 2382] Generic FASTA parser, bugzilla-daemon
[Bug 2382] Generic FASTA parser, bugzilla-daemon
[Bug 2382] Generic FASTA parser, bugzilla-daemon
Re: CVS to SVN, Peter
Re: 454 GSFlex quality score files, Peter
Re: CVS to SVN, Jared Flatow
Re: 454 GSFlex quality score files, Jared Flatow
[Bug 2382] Generic FASTA parser, bugzilla-daemon
[Bug 2382] New: Generic FASTA parser, bugzilla-daemon
Re: 454 GSFlex quality score files, Peter
Re: 454 GSFlex quality score files, Peter
Re: 454 GSFlex quality score files, Jared Flatow
Re: CVS to SVN, Peter
Re: Biopython status, Jared Flatow
[Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
[Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
[Bug 2381] translate and transcibe methods for the Seq object (in Bio.Seq), bugzilla-daemon
[Bug 2381] New: translate and transcibe method for the the Seq object (in Bio.Seq), bugzilla-daemon
[Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq, bugzilla-daemon
[Bug 2380] New: Bio.Nexus is adding "?" and "-" to Bio.Data.IUPACData.ambiguous_dna_values, bugzilla-daemon
Re: Biopython status, bartek wilczynski
Re: Biopython status, Peter
Re: Biopython status, Michiel De Hoon
Re: Biopython status, Sebastian Bassi
Biopython status, Jared Flatow

October 15, 2007

[Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq, bugzilla-daemon
[Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq, bugzilla-daemon
Precompute database information, Fernando
Database into variables, Fernando

October 12, 2007

Re: Output of Biopython tests, Peter
[Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
Re: Output of Biopython tests, Michiel De Hoon

October 11, 2007

Re: Revised tutorial, Sebastian Bassi
Revised tutorial, Peter
function enumerate in Bio/GFF/GenericTools.py; Bio/DocSQL.py, Michiel De Hoon
Re: Output of Biopython tests, Michiel De Hoon

October 10, 2007

Re: translate, Matthew Hobbs

October 09, 2007

Re: Configuration files, Tiago Antão
Re: Output of Biopython tests, Peter
Re: translate, Peter
translate, mhobbs_of_lawson
Output of Biopython tests, Michiel De Hoon

October 08, 2007

[Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
Re: Configuration files, Peter
[Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon

October 05, 2007

Configuration files, Tiago Antão
[Bug 2174] FDist Support in BioPython, bugzilla-daemon
[Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
[Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon

October 04, 2007

[Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0, bugzilla-daemon
Re: Coalescent code, Michiel De Hoon

October 03, 2007

Re: Coalescent code, Tiago Antão
Re: Statistics code, Tiago Antão
Re: Coalescent code, Peter
Coalescent code, Tiago Antão
Re: [BioPython] Bio.MultiProc, Michiel De Hoon
Re: Statistics code, Ralph Haygood

October 02, 2007

Re: Bio.MultiProc / Bio.FormatIO, Peter
Re: [BioPython] Bio.MultiProc, Iddo Friedberg
Re: [BioPython] Bio.MultiProc, Michiel De Hoon
[Bug 2362] test_copen fails on Windows XP as tries os.fork(), bugzilla-daemon