python.bio.devel (thread)

Biopython 1.40 beta released, Iddo Friedberg
- Re: [BioPython] Biopython 1.40 beta released, Jeffrey Chang
- Re: Biopython 1.40 beta released, Andrew Dalke
  - Minor update to "Installation on Windows" instructions, Peter
    - Re: Minor update to "Installation on Windows" instructions, Michiel Jan Laurens de Hoon
    - Re: Minor update to "Installation on Windows" instructions, Michiel Jan Laurens de Hoon
[Bug 1753] Bio.PDB: parse_pdb_header.py last mod'd 9/05/2004, bugzilla-daemon
- [Bug 1753] Bio.PDB: parse_pdb_header.py last mod'd 9/05/2004, bugzilla-daemon
[Bug 1753] New: Bio.PDB: parse_pdb_header.py last mod'd 9/05/2004, bugzilla-daemon
[Bug 1751] New: Not a bug: testing attachments to bugzilla, bugzilla-daemon
[Bug 1751] Not a bug: testing attachments to bugzilla, bugzilla-daemon
- [Bug 1751] Not a bug: testing attachments to bugzilla, bugzilla-daemon
Better doc strings for Primers patch, Jonathan Taylor
Biopython 1.40 beta pre-release, Iddo Friedberg
- Re: Biopython 1.40 beta pre-release, Michiel Jan Laurens de Hoon
- Re: Biopython 1.40 beta pre-release, Frank Kauff
We need better doc strings for primer records so here is a diff, Jonathan Taylor
- Re: We need better doc strings for primer records so here is a diff, Michiel Jan Laurens de Hoon
  - Re: We need better doc strings for primer records so here is a diff, Iddo Friedberg
  - Re: We need better doc strings for primer records so here is a diff, Jeffrey Chang
    - Re: We need better doc strings for primer records so here is a diff, Iddo Friedberg
    - Re: We need better doc strings for primer records so here is a diff, Jonathan Taylor
- Re: We need better doc strings for primer records so here is a diff, Michiel Jan Laurens de Hoon
  - Re: We need better doc strings for primer records so here is a diff, Iddo Friedberg
    - Re: We need better doc strings for primer records so here is a diff, Michiel Jan Laurens de Hoon
    - Bug patches, Peter
Freeze contributions please, Iddo Friedberg
- Re: Freeze contributions please, Iddo Friedberg
  - Re: Freeze contributions please, Frederic Sohm
- CompareACE support in biopython, bartek wilczynski
SeqRecord and Alignment inconsistencies, Matt Dimmic
- Re: SeqRecord and Alignment inconsistencies, Peter
As of now (Thursday night, California), Iddo Friedberg
- Re: As of now (Thursday night, California), Michiel Jan Laurens de Hoon
Re: Who's the dude?, Iddo Friedberg
Bio.Nexus, Michiel Jan Laurens de Hoon
- Re: Bio.Nexus, Iddo Friedberg
- Re: Bio.Nexus, Michiel Jan Laurens de Hoon
- Re: Bio.Nexus, Frank Kauff
  - Re: Bio.Nexus, Michiel Jan Laurens de Hoon
    - Re: Bio.Nexus, Frank Kauff
Faling tests, Iddo Friedberg
- Re: Faling tests, Michiel Jan Laurens de Hoon
- Re: Faling tests, Iddo Friedberg
[Fwd: Important info for all Open-Bio affiliated developers (people with CVS write access...)], Iddo Friedberg
[Bug 1654] SyntaxError in NCBIWWW.BlastParser, bugzilla-daemon
A little BLAST testing please?, Iddo Friedberg
Change to NCBIWWW BLast Parser, Iddo Friedberg
[Bug 1715] Bio.Blast.NCBIStandalone does not support standalone NCBI RPS-Blast (rpsblast) output, bugzilla-daemon
[Fwd: Question to code], Iddo Friedberg
- [BioPython] Re: [Fwd: Question to code], Frank Kauff
  - Re: [Fwd: Question to code], Iddo Friedberg
  - [BioPython] Re: [Fwd: Question to code], Iddo Friedberg
[Fwd: Re: Bio.CAPS module submission], Iddo Friedberg
- Re: [Fwd: Re: Bio.CAPS module submission], Michael Hoffman
  - Re: [Fwd: Re: Bio.CAPS module submission], Jonathan Taylor
    - Re: [Fwd: Re: Bio.CAPS module submission], Michael Hoffman
    - Re: [Fwd: Re: Bio.CAPS module submission], Jonathan Taylor
    - Re: Bio.CAPS module submission, Michael Hoffman
    - Re: Re: Bio.CAPS module submission, Iddo Friedberg
Re: Question to code, Iddo Friedberg
ENSEMBL 3' UTR, Vineeth S
- Re: ENSEMBL 3' UTR, Michael Hoffman
Nexus parser, Iddo Friedberg
- Re: Nexus parser, Michael Hoffman
  - Re: Nexus parser, Frank Kauff
    - Re: Nexus parser, Frank Kauff
    - Almost there..., Iddo Friedberg
    - Re: Almost there..., Michael Hoffman
    - Re: Almost there..., thamelry
  - Re: Nexus parser, Iddo Friedberg
- Re: Nexus parser, Jonathan Taylor
- Re: Nexus parser and Newick tree format, Peter
  - Re: Nexus parser and Newick tree format, Frank Kauff
[Bug 1718] Fasta.Dictionary should support "in" (the __contains__ method), bugzilla-daemon
[Bug 1717] Fasta.Dictionary should support has_key, bugzilla-daemon
[Bug 1711] Enhancements to Bio.SCOP module, bugzilla-daemon
Remaining regression tests, Iddo Friedberg
[Bug 1716] Fasta.Dictionary should throw KeyError for invalid keys, bugzilla-daemon
- [Bug 1716] Fasta.Dictionary should throw KeyError for invalid keys, bugzilla-daemon
- [Bug 1716] Fasta.Dictionary should throw KeyError for invalid keys, bugzilla-daemon
- [Bug 1716] Fasta.Dictionary should throw KeyError for invalid keys, bugzilla-daemon
Bio.CAPS module submission, Jonathan Taylor
[Bug 1688] Restriction.py problem with catalyze method, bugzilla-daemon
- [Bug 1688] Restriction.py problem with catalyze method, bugzilla-daemon
[Bug 1697] pdbparser should accpet pipes as well as filenames, bugzilla-daemon
- [Bug 1697] pdbparser should accpet pipes as well as filenames, bugzilla-daemon
[Bug 1709] Not using -fPIC to build shared lib., bugzilla-daemon
website error, bartek wilczynski
- Re: website error, Michiel Jan Laurens de Hoon
  - Re: website error, bartek wilczynski
[Bug 1733] compiler recognition in setup.py, bugzilla-daemon
Re: [BioPython] missing databases in Config.py of EUtils, Michiel Jan Laurens de Hoon
Getting ready for a release, II, Iddo Friedberg
- Re: Getting ready for a release, II, Jeffrey Chang
- Re: Getting ready for a release, II, Michiel Jan Laurens de Hoon
  - Re: Getting ready for a release, II, Thomas Hamelryck
- Re: Getting ready for a release, II, James Casbon
  - Re: Getting ready for a release, II, Peter
    - Re: Getting ready for a release, II, Andrew Dalke
  - Re: Getting ready for a release, II, Thomas Hamelryck
- Re: Getting ready for a release, II, James Casbon
Getting ready for a release, Iddo Friedberg
- Re: Getting ready for a release, Gaetan Lehmann
  - Re: Getting ready for a release, Iddo Friedberg
Bug, Eirik Sønneland
compass alignment parsing, Michal Kurowski
- Re: compass alignment parsing, Iddo Friedberg
Invitation to Italy and USA 2005; c/ba, IPSI-2005 Italy and USA
[Bug 1747] New: GenBank parser is very slow and memory hungry for large input files, bugzilla-daemon
[Bug 1745] Genbank parser and REGION fields, bugzilla-daemon
- [Bug 1745] Genbank parser and REGION fields, bugzilla-daemon
- [Bug 1745] Genbank parser and REGION fields, bugzilla-daemon
[Bug 1746] New: Again with the "Unexpected end of stream" when parsing Blast results, bugzilla-daemon
Future plans for Numerical Python, Michiel Jan Laurens de Hoon
Re: [BioPython] Patch to fix testing failures in biopython-1.30, Michiel Jan Laurens de Hoon
- Re: [BioPython] Patch to fix testing failures in biopython-1.30, Michiel Jan Laurens de Hoon
New release?, Thomas Hamelryck
- Re: New release?, Jonathan Taylor
  - Re: New release?, Iddo Friedberg
    - Re: New release?, Michiel Jan Laurens de Hoon
    - Re: New release?, Gaetan Lehmann
    - Re: New release?, Iddo Friedberg
[Bug 1745] New: Genbank parser and REGION fields, bugzilla-daemon
Re: Re: [BioPython] documentation issues, Michiel Jan Laurens de Hoon
- Re: Re: [BioPython] documentation issues, thamelry