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Building biopython 1.30 on Windows with MSCV: msg#00063python.bio.devel
I'm trying to build and/or install BioPython 1.30 on Windows XP. I would guess that since there isn't a Windows installer for Biopython 1.30 (yet) that most development occurs on linux/unix. Furthermore, the only instructions in the documentation are for Borland's free C++ compiler: http://www.bioinformatics.org/bradstuff/bp/tut/Tutorial001.html#sec:windows_install I have Microsoft Visual C++ 6.0 (MSVC) which I have successfully used to compile other python extensions (both a simple install, and creation of a windows installation program). In theory using MSVC 6.0 should actually be easier, but it looks like no-one has tried this recently as there is a library problem of some sort. If I try this for BioPython 1.30: python setup.py bdist_wininst After a few warnings, it fails here: building 'Bio.PDB.mmCIF.MMCIFlex' extension C:\Program Files\Microsoft Visual Studio\VC98\BIN\cl.exe /c /nologo /Ox /MD /W3 /GX /DNDEBUG -IBio -Ic:\Python23\include -Ic:\Python23\PC /TcBio/PDB/mmCIF/lex.yy.c /Fobuild\temp.win32-2.3\Release\Bio/PDB/mmCIF/lex.yy.obj lex.yy.c Bio/PDB/mmCIF/lex.yy.c(12) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directory error: command '"C:\Program Files\Microsoft Visual Studio\VC98\BIN\cl.exe"' fail ed with exit status 2 Before I can too carried away, does anyone on the list have any experience of building BioPython on windows? Thank you Peter -- Whatever you Wanadoo: http://www.wanadoo.co.uk/time/ This email has been checked for most known viruses - find out more at: http://www.wanadoo.co.uk/help/id/7098.htm |
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