lang.perl.bio.general (thread)

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gbrowse -- problem with gene model graph, Philip MacMenamin
Tigr BLAST, clangin
Bio::SeqIO::genbank, Bio::Species - can't get full species name, Matthew Betts
- Re: Bio::SeqIO::genbank, Bio::Species - can't get full species name, Jason Stajich
- Re: Bio::SeqIO::genbank, Bio::Species - can't get full species name, James Wasmuth
pir format for input and output os sequences, luisa pugliese
- Re: pir format for input and output os sequences, Heikki Lehvaslaiho
cvs.bioperl.org problem?, avilella
- RE: cvs.bioperl.org problem?, Brian Osborne
  - Re: cvs.bioperl.org problem?, Chris Dagdigian
chance database from swissprot to fasta, hafiz hafiz
- Re: chance database from swissprot to fasta, James Wasmuth
AlignIO::clustalw bug, David Arenillas
- RE: AlignIO::clustalw bug, Brian Osborne
Forget V1AGRA, there's a new game in town!, zachary
Information content of alignment, Malay
- Re: Information content of alignment, martin
  - Re: Information content of alignment, Shawn Hoon
    - Re: Information content of alignment, Malay
e-values, stephan rosecker
- Re: e-values, Jason Stajich
- Re: e-values, Shawn Hoon
- Re: e-values, Rob Edwards
- Re: e-values, Paulo Almeida
  - Re: e-values, stephan rosecker
Bio::Index::AbstractSeq->fetch() overwrites primary_id with display_id, Matthew Betts
Bioperl objects and subroutines, Jonathan Manning
- Re: Bioperl objects and subroutines, Stefan Kirov
  - RE: Bioperl objects and subroutines, Brian Osborne
    - Re: Bioperl objects and subroutines, Stefan Kirov
- Re: Bioperl objects and subroutines, Andreas Kahari
  - Re: Bioperl objects and subroutines, Jonathan Manning
- Re: Bioperl objects and subroutines, Jason Stajich
again on remove gapped columns, luisa pugliese
- Re: again on remove gapped columns, Jer-Ming Chia
Undeliverable message, POSTMASTER
Bio::Seq weight ?, stephan rosecker
- Re: Bio::Seq weight ?, Heikki Lehvaslaiho
  - Message not available
    - Re: Bio::Seq weight ?, Heikki Lehvaslaiho
    - Re: Bio::Seq weight ?, Heikki Lehvaslaiho
bioperl-db performance: load_seqdatabase.pl throughput speed, Henry R Bigelow
- Re: bioperl-db performance: load_seqdatabase.pl throughput speed, Hilmar Lapp
  - Re: bioperl-db performance: load_seqdatabase.pl throughput speed, henry bigelow
remove gapped colums, luisa pugliese
- Re: remove gapped colums, Shawn Hoon
- Re: remove gapped colums, Shawn Hoon
- Message not available
  - Re: remove gapped colums, James Wasmuth
- Re: remove gapped colums, Iain Wallace
SMART domain sequence images, john herbert
- Re: SMART domain sequence images, Stephen L. Mathias
- Re: SMART domain sequence images, Barry Moore
testing a new Open-Bio website and mail list archive search, Chris Dagdigian
{off topic} Apple is giving away 5 workgroup sized clusters in a program for bioinformatics researchers, Chris Dagdigian
New package: Bio::Constants/Bio::Root::Constants?, Stefan Kirov
- Re: New package: Bio::Constants/Bio::Root::Constants?, Jason Stajich
  - Re: New package: Bio::Constants/Bio::Root::Constants?, Stefan A Kirov
Super hot CAS1N0 B0nus 0ffers! carlos mikael', larry
optimal integration of primer3 into biopython and others using swig and biomoby, Xian
Species in a BLAST hit, Jonathan Manning
- Re: Species in a BLAST hit, Jason Stajich
年収６千万円迄で不足の方に大好評！やっと、景気回復始まるから収入は６千万以上を目的！第００５０４号), ◆株式会社経済文庫
This Drug puts VlAGRA to shame!!, hank
Starting from scratch, a trivial problem?, JAMES IBEN
- Re: Starting from scratch, a trivial problem?, Barry Moore
  - Bio/Search/Iteration/GenericIteration.pm, Jack Chen
    - Re: Bio/Search/Iteration/GenericIteration.pm, Jason Stajich
- RE: Starting from scratch, a trivial problem?, Brian Osborne
New minor version ?, Luc.Gauthier
- Re: New minor version ?, Jason Stajich
  - Re: New minor version ?, Aaron J. Mackey
    - Re: New minor version ?, Lincoln Stein
RE: population genetics, Freimuth,Robert
EMBL file with no feature table, Eric Just
- RE: EMBL file with no feature table, Brian Osborne
problems with BLAST, omid gulban
- RE: problems with BLAST, Marc Logghe
Gbrowse/BioSQL question, Sean Davis
- Re: Gbrowse/BioSQL question, Lincoln Stein
- RE: Gbrowse/BioSQL question, Marc Logghe
- RE: Gbrowse/BioSQL question, Marc Logghe
RE: Getting Co-ordinates in Bio::Graphics::Panel, Crabtree, Jonathan
- Re: Getting Co-ordinates in Bio::Graphics::Panel, Lincoln Stein
Re: [Bioperl-guts-l] problem in bioperl installation, Jason Stajich
Protein IDs: GenPept and SwissProt, Jonathan Manning
- Re: Protein IDs: GenPept and SwissProt, Jason Stajich
  - Re: Protein IDs: GenPept and SwissProt, Jonathan Manning
Error when parsing MEME file, Amonida Zadissa
- Re: Error when parsing MEME file, Jason Stajich
- Re: Error when parsing MEME file, Stefan Kirov
- Re: Error when parsing MEME file, Stefan Kirov
- Re: Error when parsing MEME file, Stefan Kirov
- Message not available
  - Re: Error when parsing MEME file, Amonida Zadissa
- RE: Error when parsing MEME file, skirov
  - RE: Error when parsing MEME file, Jason Stajich
    - Re: Error when parsing MEME file, Stefan Kirov
    - Re: Error when parsing MEME file, Amonida Zadissa
Multiple alignments and Biographics, Sean Davis
- Re: Multiple alignments and Biographics, Lincoln Stein
- Re: Multiple alignments and Biographics, Jason Stajich
open source bio license question (fwd), Aaron J Mackey
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Re: Usage of tigr.pm with SeqIO.pm, Josh Lauricha
setting BLAST query name, Rachel Richard
- Re: setting BLAST query name, Jason Stajich
Testing Bioperl objects for equality: attempt 2, Peter van Heusden
Help, Sameet Mehta
Re: ABI.pm and .ab1 files, Kevin Roland Viel
Having the Blast output of StandAloneBlast in a single file, omid gulban
- Re: Having the Blast output of StandAloneBlast in a single file, Remo Sanges
Re: All mouse mRNAs, Andrew Walsh
Re: Variation, wangqi
Re: module for pattern matching, Andrew Walsh
Re: hmmpfam report indexing, Jason Stajich
Re: parsing hmmpfam reports, Jason Stajich
Re: Categorization of EST's by species/taxonomy/lineage, Jason Stajich
- Re: Categorization of EST's by species/taxonomy/lineage, Paulo Almeida
  - Re: Categorization of EST's by species/taxonomy/lineage, Mark Johnson
Re: Quick bio::graphics question, Lincoln Stein
- Re: Re: Quick bio::graphics question, Adam Woolfe
  - Re: Re: Quick bio::graphics question, Lincoln Stein
    - Getting Co-ordinates in Bio::Graphics::Panel, Adam Woolfe
    - Re: Getting Co-ordinates in Bio::Graphics::Panel, Lincoln Stein
Re: "Package 'GD' not found on server." Bioperl 1.4 Install, Lincoln Stein
INSTALL.WIN Documentation, Barry Moore