lang.perl.bio.general (date)

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lang.perl.bio.general (date)

April 30, 2004

"Package 'GD' not found on server." Bioperl 1.4 Install, JDCGo
Mail delivery failed: returning message to sender, Mail Delivery System
From Contig to MSA, Lewis, Christopher
Re: module for pattern matching- i got it thanx, Stefan Kirov
hmmpfam report indexing, stephan . rosecker
RE: Distance between residues, Jurgen Pletinckx
RE: parsing hmmpfam reports, Marc Logghe
parsing hmmpfam reports, stephan . rosecker
Distance between residues, KHOUEIRY pierre
module for pattern matching- i got it thanx, gowthaman ramasamy
Re: module for pattern matching, Andreas Kahari
Allegato non consentito, Mail Server administrator
module for pattern matching, gowthaman ramasamy
CAS1N0: New Deal!! 50% Sign Up Bonus! mailman naomii, jeremy

April 29, 2004

Re: Categorization of EST's by species/taxonomy/lineage, Paulo Almeida
RE: parsing blast reports- co-ordinate of hit, Marc Logghe
parsing blast reports- co-ordinate of hit, Nandita Mullapudi
Categorization of EST's by species/taxonomy/lineage, Mark Johnson
Re: All mouse mRNAs, Sean Davis
Super hot CAS1N0 B0nus 0ffers! yomama rubyq, joel
Re: All mouse mRNAs, pdavid
Re: All mouse mRNAs, Hilmar Lapp
Drawing gene structures without SeqIO in Bio::Graphics, Adam Woolfe
Re: Parsing a Genbank file to get the Comment line., Steven Lembark
All mouse mRNAs, Sean Davis
Re: Variation, Heikki Lehvaslaiho
Re: ABI.pm and .ab1 files, Malay

April 28, 2004

ABI.pm and .ab1 files, Malay
Re: installation of graphics module, Barry Moore
CAS1N0: New Deal!! 50% Sign Up Bonus! reynolds excalibur, bryon
SeqIO.pm question, Simon K. Chan
Re: Variation, Chris Dwan
Re: Variation, Stefan Kirov
[BioPython] BOSC 2nd Call For Papers, Darin London
Re: Variation, Heikki Lehvaslaiho
Ultimate Internet CAS1N0! gray buffyu, randell

April 27, 2004

Re: GO categories and load_ontology.pl, Hilmar Lapp
Re: refseqs, Ewan Birney
Usage of tigr.pm with SeqIO.pm, Simon K. Chan
Re: refseqs, Sean Davis
RE: refseqs, Brian Osborne
refseqs, Phillips, Ken
Re: population genetics, Matthew Hahn
Re: Variation, Allen Day
Re: Bio::Serach::Result::ResultI, Kan Nobuta
RE: GO categories and load_ontology.pl, Law, Annie
Re: population genetics, Paulo Almeida
Re: Variation, Stefan Kirov
Re: Variation, Heikki Lehvaslaiho
Variation, Jonathan Manning
Re: Parsing "hmmsearch" results - help, Alberto Davila
Re: paml rst file parser, Jason Stajich
population genetics, Pedro . X . Gomez-Fabre
installation of graphics module, S.Paul
paml rst file parser, Michael E Bradley
Re: Parsing "hmmsearch" results - help, Jason Stajich
Re: Bio::Serach::Result::ResultI, Jason Stajich
Re: dbEST read pb, Gilles Parmentier

April 26, 2004

Re: dbEST read pb, Hilmar Lapp
Forget V1AGRA, there's a new game in town!, timothy
Re: dbEST read pb, Gilles Parmentier
dbEST read pb, Gilles Parmentier
Parsing "hmmsearch" results - help, Alberto Davila
Bio::Serach::Result::ResultI, Kan Nobuta
Re: I would like to subscribe to this mailing list, Heikki Lehvaslaiho
Re: Ensembl Query, Heikki Lehvaslaiho
Re: Ensembl Query, john herbert

April 24, 2004

failure notice, MAILER-DAEMON

April 23, 2004

Re: How to parse bl2seq report?, szhan
Re: Ensembl Query, Stefan Kirov
Re: Ensembl Query, Jason Stajich
Ensembl Query, john herbert
Re: load_ontology and GO - progress!, Dave Howorth
Re: [Structure of remote GenBank files], Jason Stajich
Re: [Structure of remote GenBank files], Sebastien Moretti
Changes to Bio::Tools::SiRNA, Donald Jackson
Re: load_ontology and GO - progress!, Hilmar Lapp

April 22, 2004

Returned mail: see transcript for details, Mail Delivery Subsystem
Re: [Structure of remote GenBank files], Barry Moore
Don't want to donwload sequence contigs!, Jonathan Manning
Re: statistics of sequences, S.Paul
load_ontology and GO - progress!, Dave Howorth
[Structure of remote GenBank files], Sebastien Moretti
Prescr:ip`ti`on drug's wi:th`out the pre:scription! (etxhhr), garrett
Re: failures on the stable branch, Hilmar Lapp

April 21, 2004

Muscle Relaxers, Pain Relief and more.. Check it out!, ervin
Re: Makefile.PL and cvs.bioperl.org, Allen Day
Re: Makefile.PL and cvs.bioperl.org, Chris Dagdigian
Re: Mapping between aligment position and reference (1st) sequence position for MAF files, avilella
Re: Mapping between aligment position and reference (1st) sequence position for MAF files, Jason Stajich
Mapping between aligment position and reference (1st) sequence position for MAF files, avilella
Re: Parsing a Genbank file to get the Comment line., Jason Stajich
Re: failures on the stable branch, Jason Stajich
Re: Makefile.PL and cvs.bioperl.org, Jason Stajich
Makefile.PL and cvs.bioperl.org, Dave Howorth
Parsing a Genbank file to get the Comment line., Khan, Sohail
Re: failures on the stable branch, Dave Howorth
Re: Most used parts of Bioperl, Peter van Heusden
Re: bio::graphics problem, Andreas Boehm
RE: bioperl-run on windows XP, Brian Osborne
Re: Primer3.pm problems., Jason Stajich
Re: failures on the stable branch, Jason Stajich
Re: Primer3.pm problems., Rob Edwards
Re: failures on the stable branch, Rob Edwards
Re: statistics of sequences, Heikki Lehvaslaiho
Re: failures on the stable branch, Dave Howorth
Re: Most used parts of Bioperl, Jason Stajich
Most used parts of Bioperl, Peter van Heusden
bioperl-run on windows XP, cr cd
Re: Bio::AlignIO::phylip write_aln ignores line_length, Heikki Lehvaslaiho
statistics of sequences, S.Paul
bio::graphics problem, mariano latorre
Bio::AlignIO::phylip write_aln ignores line_length, avilella
Muscle Relaxers, Pain Relief and more.. Check it out!, chang

April 20, 2004

Re: failures on the stable branch, Jason Stajich
failures on the stable branch, Hilmar Lapp
Re: how to use pipe in perl script?, Zhou Yu
caBIOperl, Covitz, Peter (NIH/NCI)
Re: Compilation error, Heikki Lehvaslaiho
RE: Compilation error, Brian Osborne
Compilation error, Sivakumar.K.C
Re: how to use pipe in perl script?, Heikki Lehvaslaiho
Re: How to parse bl2seq report?, Paulo Almeida
Re: Bioperl 1.4 on Debian, Matt Hope
Ensembl and Bio::DB::GFF, Venky Nandagopal
How to parse bl2seq report?, szhan

April 19, 2004

Prescr`ip`tion drugs without the p:re'sc`ri`pt'ion! (ymojdd), harold
Re: load_ontology/GO error, Hilmar Lapp
Re: small change to Bio::Align::Utilities, Stefan Kirov
Primer3.pm problems., john herbert
parse bl2seq report, szhan
failure notice, MAILER-DAEMON
Re: how to use pipe in perl script?, Andreas Kahari
Re: how to use pipe in perl script?, Paulo Almeida
Re: small change to Bio::Align::Utilities, avilella
how to use pipe in perl script?, Zhou Yu
Problem with Bio::Assembly::IO::ace, Andrew Nunberg
Re: TreeIO problem, Mikel Egaa9pen-b
Re: Re: ComparableI stuff, Peter van Heusden
load_ontology/GO error, Dave Howorth

April 17, 2004

new module: Bio::Tools::WebBlat, Allen Day

April 16, 2004

Re: blastz parser, Jason Stajich
blastz parser, Karen Hayden
small change to Bio::Align::Utilities, Stefan Kirov
RE: bioperl-db & biosql documentation, Brian Osborne
bioperl-db & biosql documentation, Dave Howorth
Anonymous Valium, Soma, VIA-GRA., walter
Re: TreeIO problem, Dave Howorth
Re: bioperl-db make test errors, Dave Howorth
medications without perscriptions for you!, bradford
Re: TreeIO problem, Allen Day

April 15, 2004

RE: tiling hits to multiple alignment, Mike Muratet
Re: bioperl-db make test errors, Hilmar Lapp
Re: ComparableI stuff, Hilmar Lapp
Re: tiling hits to multiple alignment, Barry Moore
Re: TreeIO problem, Jason Stajich
RE: tiling hits to multiple alignment, Jurgen Pletinckx
bioperl-db make test errors, Dave Howorth
tiling hits to multiple alignment, Babenko, Vladimir (NIH/NLM/NCBI)
Re: problem of installing bioperl 1.4: 404 NOT found, Barry Moore
Error message when parsing Blast report, laurence . amilhat
Re: AlignIO: Sequence length appended to name in output, Heikki Lehvaslaiho
AlignIO: Sequence length appended to name in output, Iain Wallace
Re: any documentation on bioperl?, Remo Sanges
RE: any documentation on bioperl?, Brian Osborne
any documentation on bioperl?, gabriele bucci
TreeIO problem, Mikel Ega

April 14, 2004

Re: StandAloneBlast and Shell Variable Question, James Thompson
Re: StandAloneBlast and Shell Variable Question, Jason Stajich
Re: StandAloneBlast and Shell Variable Question, Remo Sanges
StandAloneBlast and Shell Variable Question, Bill Dirks
RE: Re: Problems with installing bioperl using PPM3, Chris Fields
RE: Re: Problems with installing bioperl using PPM3, Brian Osborne
Re: Re: Problems with installing bioperl using PPM3, omid
PR0ZAC on yourdoorstep. Anonymously., tanner
problem of installing bioperl 1.4: 404 NOT found, zqchenupenn
distances from one atom to another in biological structures, Alex Gutteridge
Re: [BioSQL-l] Bio::SeqFeature::Generic score & source tags in Biosql, Hilmar Lapp
Re: Speeding Up File Access, Jason Stajich
Re: New attribut, Jason Stajich
New attribut, stephan rosecker
Re: Bio::Root::Root.pm and taint, Jason Stajich
Anonymous Valium, Soma, VIA-GRA. No one needs to know!, edmond

April 13, 2004

Re: Bio::Root::Root.pm and taint, rich
AssemblyIO (ace), singlets, and Contigs, Chad Matsalla
Ultimate Internet CAS1N0! tootsie ladybugs, leon
Re: blast_sequence problem, Regina Schmitt
Patch to CVS to implement ComparableI interface, Peter van Heusden
Re: Bio::Root::Root.pm and taint, Jason Stajich
Bio::Root::Root.pm and taint, rich
$3 a dose. FUC:K A'L`L W'E`E'K:END! (hfudwp), ervin
distances from one atom to another in biological structures, Michael E Bradley

April 12, 2004

Re: RE:Segmentation fault, Jason Stajich
RE:Segmentation fault, stephan rosecker
Re: RE:Segmentation fault, Jason Stajich
Re: Segmentation fault, stephan rosecker
RE:Segmentation fault, stephan rosecker
Re: warning, Technical Support
Segmentation fault, stephan rosecker
Re: protein or dna ?, Andreas Kahari
Re: Segmentation fault, Andreas Kahari
Ultimate Internet CAS1N0! midori velvetn, dante
Super hot CAS1N0 B0nus 0ffers! megan lauram, galen
protein or dna ?, Koen van der Drift

April 11, 2004

Segmentation fault, stephan rosecker
Life is easy with Ppr0zacC, Blane
Re: improved, refs

April 10, 2004

Speeding Up File Access, Johnny Amos
Re: Perl Regular Expressions sought that match typical, Heikki Lehvaslaiho
Super hot CAS1N0 B0nus 0ffers! zenith strawberx, kory
Perl Regular Expressions sought that match typical, M.Shahid
Re: How sequence fetching should fail?, Heikki Lehvaslaiho
Re: Pise Jobs, Catherine Letondal
CAS1N0: New Deal!! 50% Sign Up Bonus! bridges researchn, devon
Re: Problems with installing bioperl using PPM3, Chris Fields

April 09, 2004

Programming, Algorithms, and Gusfield, Michael B Allen
Re: Problems with installing bioperl using PPM3, Barry Moore
Batch GenPept - up and running?, Chris Fields
blast_sequence problem, Regina Schmitt
Re: [Bioperl-guts-l] Difficulty to recover the OS line in Swissprot, James Wasmuth
CAS1N0: New Deal!! 50% Sign Up Bonus! eugene slackerc, luciano
RE: Parsing Blast HIT data, Brian Osborne

April 08, 2004

Re: Re: Problems with installing bioperl using PPM3, Chris Fields
Parsing Blast HIT data, Desmond LIM
Re: Improved document, john
Re: Re: Problems with installing bioperl using PPM3, omid
Re: [Bioperl-guts-l] bioperl commit, Allen Day
Super hot CAS1N0 B0nus 0ffers! front242 jordan23w, garry

April 07, 2004

Re: Problems with installing bioperl using PPM3, Chris Fields
Pise Jobs, Barry Moore
Stop Spreading Hatred, SAR
Problems with installing bioperl using PPM3, omid
CAS1N0: New Deal!! 50% Sign Up Bonus! mailman james1u, keven

April 06, 2004

Re: StandAloneBlast parameters, Matthew Laird
Re: StandAloneBlast parameters, Jason Stajich
StandAloneBlast parameters, Matthew Laird
Re: SVG on the server, hz5
RE: limiting E value - Argument "e-134" isn't numeric?, Joseph Bedell
RE: limiting E value - Argument "e-134" isn't numeric?, Jason Stajich
Re: SVG on the server, Todd Harris
Re: SVG on the server, Todd Harris
SVG on the server, hz5
RE: limiting E value - Argument "e-134" isn't numeric?, Chris Dwan (CCGB)
RE: limiting E value - Argument "e-134" isn't numeric?, Joseph Bedell
Warning: E-mail containing attachment(s) blocked, MailScanner
limiting E value - Argument "e-134" isn't numeric?, Nandita Mullapudi
Re: Reliability of get_Seq_by_gi, Wes Barris
Re: Reliability of get_Seq_by_gi, Rob Edwards
Atención: Virus detectado en e-mail, MailScanner

April 05, 2004

Re: Reliability of get_Seq_by_gi, Wes Barris
BioPerl Bootcamp : June 21-25 in Montreal, Sylvain Foisy
How sequence fetching should fail?, Heikki Lehvaslaiho
Re: Reliability of get_Seq_by_gi, Wes Barris

April 04, 2004

Re: Reliability of get_Seq_by_gi, Rob Edwards
Re: Reliability of get_Seq_by_gi, Wes Barris

April 03, 2004

Re: Storing Sequences and Alignments, Hilmar Lapp

April 02, 2004

Re: Pairwise seq. comarison, Jason Stajich
Re: Pairwise seq. comarison, Barry Moore
Pairwise seq. comarison, henrik nilsson
Re: getting top blast hit, Nandita Mullapudi
Re: getting top blast hit, Paulo Almeida
Re: getting top blast hit, Jason Stajich
Re: getting top blast hit, Nandita Mullapudi
Re: Storing Sequences and Alignments, Aaron J. Mackey
Re: base content, Paulo Almeida
Storing Sequences and Alignments, michael watson (IAH-C)
base content, gabriele bucci
Re: deleting string fragments?, Andreas Kahari
Re: Reliability of get_Seq_by_gi, Heikki Lehvaslaiho
RE: deleting string fragments?, Jurgen Pletinckx
FDA Drug Better than V_I_A_G_R_A: Only $3 a dose! aylmer bozo, tommy

April 01, 2004

Reliability of get_Seq_by_gi, Wes Barris
RE: Parsing a Fasta file, michael watson (IAH-C)
Re: Trouble installing bioperl-ext / Bio::SeqIO::staden::read, Aaron J. Mackey
Trouble installing bioperl-ext / Bio::SeqIO::staden::read, Barry Moore
Re: Parsing a Fasta file, Chris Dwan (CCGB)
Parsing a Fasta file, Desmond LIM
Re: deleting string fragments?, James Wasmuth
Re: deleting string fragments?, Paulo Almeida
deleting string fragments?, Gyoergy Abrusan
Re: Singapore, Remo Sanges
Singapore, Richard Holland

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