lang.perl.bio.general (thread)

NDN: Re: Protected Mail Delivery, Mailer-Daemon
overlapping features, gabriele . bucci
Re: maxstrengthmail confirmation [Re: get cds from genbank record], D. Joe Anderson
- DO NOT REPLY - Inflex scan report [0331185120902], antivirus
REPLY BACK, M BATES ALANN
getting top blast hit, Nandita Mullapudi
- Re: getting top blast hit, Sean Davis
Interface directly to Unigene DB at NCBI?, Jeff Weeks
- Re: Interface directly to Unigene DB at NCBI?, Andrew Macgregor
AMAZINnG PRICEtS on F.D.A. DRUGiS pacersc octoberq abcdb, lawrence
A problem parsing BLASTX 2.2.8 reports, Matthew Links
- Re: A problem parsing BLASTX 2.2.8 reports, Jason Stajich
  - Re: A problem parsing BLASTX 2.2.8 reports, Gilles Parmentier
    - Re: A problem parsing BLASTX 2.2.8 reports, Jason Stajich
  - Re: A problem parsing BLASTX 2.2.8 reports, Matthew Links
how to find the gene's name ?, laure . quintric
- Re: how to find the gene's name ?, Heikki Lehvaslaiho
  - Message not available
    - Re: how to find the gene's name ?, Heikki Lehvaslaiho
- RE: [SPAM] how to find the gene's name ?, Brian Osborne
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general design of the IO system, Steffen Grossmann
- Re: general design of the IO system, Jason Stajich
Bio::TreeIO problems parsing bootstrap values in newick format trees, Vamsi
- Re: Bio::TreeIO problems parsing bootstrap values in newick format trees, Jason Stajich
Re: read it immediately, Auto-reply from support@xxxxxxxxxxx
Skipping invalid entries in GenBank, Peter Jun
- Re: Skipping invalid entries in GenBank, Heikki Lehvaslaiho
Undeliverable message returned to sender, Unknown
Bio::Index::Fasta, Bio::Index::Qual, Mark Johnson
- RE: Bio::Index::Fasta, Bio::Index::Qual, Brian Osborne
  - RE: Bio::Index::Fasta, Bio::Index::Qual, Mark Johnson
desc in fasqta names, Gilles Parmentier
- Re: desc in fasqta names, Remo Sanges
"strand" line in bl2seq output, Dominique Vlieghe
- RE: "strand" line in bl2seq output, Brian Osborne
  - And the correct answer is..., Dominique Vlieghe
- Re: "strand" line in bl2seq output, Remo Sanges
- Re: "strand" line in bl2seq output, Remo Sanges
Be a GOD in the sack! shit minou mike1, sheldon
Undeliverable Mail, Postmaster
- Undeliverable Mail, Postmaster
Seq::IO/clustalw, Liam Elbourne
- Re: Seq::IO/clustalw, Heikki Lehvaslaiho
- RE: Seq::IO/clustalw, Brian Osborne
Is anyone attending RECOMB?, Stefan Kirov
Biggest meedication site on net! Exceptional offers for you!, mel
CAS1N0: New Deal!! 50% Sign Up Bonus! sweety rickys, allen
Play George W. Bush Credibility Twister, shak91
Better than V_I_A_G_R_A and cheaper, too! dan glenn, issac
IUB/IUPAC nucleic acid codes, Richard Rouse
- Re: IUB/IUPAC nucleic acid codes, Aaron J. Mackey
- Re: IUB/IUPAC nucleic acid codes, Allen Day
  - RE: IUB/IUPAC nucleic acid codes, Richard Rouse
    - Re: IUB/IUPAC nucleic acid codes, Aaron J. Mackey
coloring subseq, KHOUEIRY pierre
- Re: coloring subseq, Andreas Kahari
A question about Bio::Graphics, Zhongwu . Lai
Perl Regular Expressions sought that match typical bioinformatics applications input data, M.Shahid
- Re: Perl Regular Expressions sought that match typical bioinformatics applications input data, Andreas Kahari
- Re: Perl Regular Expressions sought that match typical bioinformatics applications input data, Jeffrey Chang
Buy C_I_A_L_I_S cheaply! cuddles playboy, thad
Sequence IDs, Robson Francisco de Souza
- Re: Sequence IDs, Heikki Lehvaslaiho
Tobacco-Offer, Post Budget
hi there! dundeec zhongguop soccer1c, levi
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hash key for SeqFeatureI, Peter van Heusden
- Re: hash key for SeqFeatureI, Chris Dwan (CCGB)
  - Re: hash key for SeqFeatureI, Jason Stajich
- Re: hash key for SeqFeatureI, Hilmar Lapp
GOD in the sack? No? Here's how! lulu new rhonda, donnie
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Re: asking for a help, Jason Stajich
As Seen on CNN, the Winningest CAS1N0! groovy stingray, elijah
Re: : Bio::DB::Query::GenBank retrieves fewer sequences than Webbrowser query, Paulo Almeida
Perl Regular Expressions sought that match typical, M.Shahid
Pedro's haplotype block/tag system in, Ewan Birney
- Re: Pedro's haplotype block/tag system in, Pedro . X . Gomez-Fabre
Re:: Bio::DB::Query::GenBank retrieves fewer sequences than Webbrowser query, T.D. Houfek
- Re:: Bio::DB::Query::GenBank retrieves fewer sequences than Webbrowser query, Chris Dwan (CCGB)
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BLAST problem: limiting # of HSPs, Kevin Beckmann
Working with Alignments, Barry Moore
- Re: Working with Alignments, Jason Stajich
- DO NOT REPLY - Inflex scan report [0324200924879], antivirus
Printing strings without return, Gyoergy Abrusan
- Re: Printing strings without return, Jason Stajich
- Re: Printing strings without return, Paulo Almeida
- Re: Printing strings without return, Andreas Kahari
- Re: Printing strings without return, Chris Dwan (CCGB)
extract_feature_seq, Charles Hauser
- Re: extract_feature_seq, Charles Hauser
Fetching Fasta seqs from GenBank - Help request, Alberto Davila
- Re: Fetching Fasta seqs from GenBank - Help request, Jason Stajich
  - Re: Fetching Fasta seqs from GenBank - Help request, Alberto Davila
    - Re: Fetching Fasta seqs from GenBank - Help request, Remo Sanges
    - Re: Fetching Fasta seqs from GenBank - Help request, Sean Davis
    - Re: Fetching Fasta seqs from GenBank - Help request, Barry Moore
    - Re: Fetching Fasta seqs from GenBank - Help request, Sean Davis
    - Re: Fetching Fasta seqs from GenBank - Help request, Alberto Davila
    - Re: Fetching Fasta seqs from GenBank - Help request, sanges
    - Re: Fetching Fasta seqs from GenBank - Help request, Alberto Davila
Buy C_I_A_L_I_S cheaply! mailer campbell, daryl
Bio::DB::Query::GenBank retrieves fewer sequences than Webbrowser query, Jürgen Schmitz
- Re: Bio::DB::Query::GenBank retrieves fewer sequences than Webbrowser query, Paulo Almeida
coordinate issue with Bio::SearchIO::psl, Elliott H Margulies
- Re: coordinate issue with Bio::SearchIO::psl, Jason Stajich
server suff: doc.bioperl.org site, Jason Stajich
Re: Bio::AlignIO::po, Matthew Betts
- Re: Bio::AlignIO::po, Jason Stajich
- Re: Bio::AlignIO::po, Heikki Lehvaslaiho
  - Re: Bio::AlignIO::po, Matthew Betts
PR0-ZAC: The world's most popular anti-depressant!, kristopher
New Drug 8x more effective than Vi-ag-ra!, jay
AB1 files and sample offsets, Kevin Roland Viel
scf.pm and weird scf-writers, Chad Matsalla
Correct values for "strand?", Chris Dwan (CCGB)
- Re: Correct values for "strand?", Chris Fields
Identifying bla(s)t hits which overlap, Charles Hauser
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How to extract intron's exon sequences?, 周宇
- Re: How to extract intron's exon sequences?, Jason Stajich
Can't run bioperl from java, mpjfb
- Re: Can't run bioperl from java, Andreas Kahari
- Re: Can't run bioperl from java, Gert Thijs
- Re: Can't run bioperl from java, Oliver Wafzig
  - Re: Can't run bioperl from java, mpjfb
alignio, Michael Cipriano
- Re: alignio, Jason Stajich
bioperl installation advice needed, William Strauss
- Re: bioperl installation advice needed, Jason Stajich
RE: ABI.pm and .ab1 files, SRMD, Col - Underwood, Anthony
retrieving genomic sequence, gabriele bucci
- ABI.pm and .ab1 files, Kevin Roland Viel
- Re: retrieving genomic sequence, Stefan Kirov
- Re: retrieving genomic sequence, Jason Stajich
Bio::Tools::Genewise, Bill Dirks
- Re: Bio::Tools::Genewise, Shawn Hoon
  - Re: Bio::Tools::Genewise, Ewan Birney
    - Re: Bio::Tools::Genewise, Jason Stajich
    - Re: Bio::Tools::Genewise, Bill Dirks
SearchIO::blast frac_aligned/identical/conserved bug fix, Steve Chervitz
Bio::TreeIO::svggraph problems, Vamsi
- Re: Bio::TreeIO::svggraph problems, Paulo Almeida
  - Re: Bio::TreeIO::svggraph problems, Vamsi
- Bio::TreeIO::svggraph problems, Vamsi
Bio::PopGen, rich
- Re: Bio::PopGen, Jason Stajich
GFF synopsis code question, Sean Davis
- Re: GFF synopsis code question, Lincoln Stein
Returned mail: see transcript for details, Mail Delivery Subsystem
Re: Bio::SearchIO blast_parsing, Ralf Schmid
Bio::SearchIO blast_parsing dot_at_the_end_of query_accession, Ralf Schmid
- Re: Bio::SearchIO blast_parsing dot_at_the_end_of query_accession, Jason Stajich
  - Message not available
    - Re: Bio::SearchIO blast_parsing dot_at_the_end_of query_accession, James Wasmuth
  - Re: Bio::SearchIO blast_parsing dot_at_the_end_of query_accession, James Wasmuth
    - Re: Bio::SearchIO blast_parsing dot_at_the_end_of query_accession, Jason Stajich
(no subject), From Genomes To Biomes
GO categories and load_ontology.pl, Law, Annie
- Re: GO categories and load_ontology.pl, Hilmar Lapp
  - Clustal/T-Coffee to Fasta, Alberto M R Davila
    - Re: Clustal/T-Coffee to Fasta, James Wasmuth
    - Re: Clustal/T-Coffee to Fasta, Jason Stajich
    - RE: Clustal/T-Coffee to Fasta, Brian Osborne
dbSNP connection, Joke Reumers
- Re: dbSNP connection, Allen Day
phylip wrappers, Babenko, Vladimir (NIH/NLM/NCBI)
- Re: phylip wrappers, Shawn Hoon
- Re: phylip wrappers, Sean Davis
Bio::Index::AbstractSeq.pm, Josh Lauricha
Change SVG image to PNG or other image format., Yuhui
- Re: Change SVG image to PNG or other image format., Todd Harris
Re: a bug in the package Bio::Tools::BPlite::Sbjct., Jason Stajich
Parsing EMBL DR lines with 1 accession, James Abbott
- Re: Parsing EMBL DR lines with 1 accession, Jason Stajich
Warning: E-mail containing attachment(s) blocked, MailScanner
- Warning: E-mail containing attachment(s) blocked, MailScanner
How to get the PSSm from blastpgp or PSI-Blast run, Huzefa Rangwala
- Re: How to get the PSSm from blastpgp or PSI-Blast run, Aaron J. Mackey
Bio::Tools::EPCR.pm patch request, Cook, Malcolm
- Re: Bio::Tools::EPCR.pm patch request, Jason Stajich
- RE: Bio::Tools::EPCR.pm patch request, Cook, Malcolm
  - RE: Bio::Tools::EPCR.pm patch request, Jason Stajich
Remote Psiblast, Iain Wallace
Gene Ontology - help request, D�vila
install bioperl 1.4 for window, 王維新
- RE: install bioperl 1.4 for window, Brian Osborne
  - Re: install bioperl 1.4 for window, Barry Moore
- Re: install bioperl 1.4 for window, Chris Fields
RNA analysis, Vesko Baev
- Re: RNA analysis, Jason Stajich
  - Message not available
    - Re: RNA analysis, Chris Fields
    - determining orthologs..., Bob Freeman
    - Re: determining orthologs..., Rob Edwards
    - Re: determining orthologs..., Paulo Almeida
    - Re: determining orthologs..., Ewan Birney
load_seqdatabase.pl, Barry Moore
- Re: load_seqdatabase.pl, Hilmar Lapp
bp_pg_bulk_load_gff.pl: invalid command \N, Aerts, Jan
- RE: bp_pg_bulk_load_gff.pl: invalid command \N, Aerts, Jan
- RE: bp_pg_bulk_load_gff.pl: invalid command \N, Aerts, Jan
  - RE: bp_pg_bulk_load_gff.pl: invalid command \N, Aaron J Mackey
- Re: bp_pg_bulk_load_gff.pl: invalid command \N, Scott Cain
- RE: bp_pg_bulk_load_gff.pl: invalid command \N, Aerts, Jan
Parsing features, Jonathon Greenwood
- Re: Parsing features, Jason Stajich
  - Re: Parsing features, Jonathon Greenwood
    - Re: Parsing features, Barry Moore
How to display newick tree in graphics?, Yuhui
- Re: How to display newick tree in graphics?, Josh Lauricha
  - Re: How to display newick tree in graphics?, Allen Day
RE:[2] removal, Heidi Wright
Please confirm your request to join kammi_dalnet, Yahoo! Groups
Anybody use 3'UTR for siRNA design?, 王晟, San Wang
Bioperl-db, bioperl schema, and load_seqdatabase.pl along with de l-assocs-sql.pl, Law, Annie
Bio::DB::GFF::Segment trouble, Rhazes Spell
- Re: Bio::DB::GFF::Segment trouble, Lincoln Stein
Re: [Bioperl-guts-l] [Bug 1600] New: $gb->species->ncbi_taxid, Heikki Lehvaslaiho
- RE: [Bioperl-guts-l] [Bug 1600] New: $gb->species->ncbi_taxid, Brian Osborne
  - Re: RE: [Bioperl-guts-l] [Bug 1600] New: $gb->species->ncbi_taxid, James Wasmuth
- RE: [Bioperl-guts-l] [Bug 1600] New: $gb->species->ncbi_taxid, Brian Osborne
  - Re: [Bioperl-guts-l] [Bug 1600] New: $gb->species->ncbi_taxid, James Wasmuth
    - Re: New: $gb->species->ncbi_taxid, James Wasmuth
    - Re: Re: New: $gb->species->ncbi_taxid, Heikki Lehvaslaiho
how to set up bioperl cygwin, Ibrahima BABER
- RE: how to set up bioperl cygwin, Brian Osborne
failure notice, MAILER-DAEMON
- failure notice, MAILER-DAEMON
- failure notice, MAILER-DAEMON
O|B|F mail update -- making progress on anti-spam issues with our mailing lists, Chris Dagdigian
Re: use of seq_id. was: Bio::Tools::GFF use of seqname, Lincoln Stein
bio::tools::run::blat?, Sean Davis
- Re: bio::tools::run::blat?, Jason Stajich
- Re: bio::tools::run::blat?, Shawn Hoon
fasta3 program support, Nathan Haigh
BOSC 2004 Announcement and Call for Papers (fwd), Darin London
- seeking advice about setting up a local GenBank mirror, Michael Cariaso
Web site notes, Brian Osborne
Printing string fragments?, Gyoergy Abrusan
- Re: Printing string fragments?, Andreas Kahari
- RE: Printing string fragments?, Brian Osborne
Part 2: TreeIO question/problem, Simon K. Chan
- Re: Part 2: TreeIO question/problem, Jason Stajich
TreeIO question/problem, Simon K. Chan
OSX, NCBI blast 2.2.8, blast parsers, Jason Stajich
biosql error, 박준형
- Re: biosql error, Hilmar Lapp
Bioperl 1.4 on Debian, Kutbuddin Doctor
- Re: Bioperl 1.4 on Debian, Josh Lauricha
  - Re: Bioperl 1.4 on Debian, D. Joe Anderson
Bio::Annotation::Reference, Barry Moore
- Re: Bio::Annotation::Reference, Jason Stajich
passing HTML code to start_report (HTMLResultWriter.pm), Charles Hauser
This drug puts V I A G R A to shame!, brooks
Fight off the signs of aging!, chris
phd 2 abi file, Michael Cipriano
- Re: phd 2 abi file, Stefan Weckx
  - RE: phd 2 abi file, Michael Cipriano
Use offshore phar-macies to save $$$ on your meds!, marlin
Locatable sequence with numbers, Iain Wallace
- Re: Locatable sequence with numbers, Heikki Lehvaslaiho
Forward of moderated message, bioperl-guts-l-bounces
- Re: Forward of moderated message, Rob Edwards
- Re: Forward of moderated message, Heikki Lehvaslaiho
modules for siRNA design, 王晟, San Wang
- Re: modules for siRNA design, Heikki Lehvaslaiho
  - Re: modules for siRNA design, Donald Jackson
- Re: modules for siRNA design, Donald Jackson
Can't locate object method "start" via package "Bio::Seq::RichSeq", 王晟, San Wang
Mail delivery failed: returning message to sender, Mail Delivery System
protein networks, Richard Adams
- RE: protein networks, Brian Osborne
  - Re: protein networks, Boris Steipe
- protein networks, Richard Adams
Re: Testing BioPerl objects for equality, Peter van Heusden
sugper viagrga, darnell
Why Perl, Eric Brown
Super Cheap V-1-A-G-R-A!! 70% off!, gil
V-1-A-G-R-A 70% off!!!, stacey
new GFF3 support methods added, Chris Mungall
- Re: new GFF3 support methods added, Hilmar Lapp
  - Re: new GFF3 support methods added, Chris Mungall
    - Re: new GFF3 support methods added, Hilmar Lapp
    - Re: new GFF3 support methods added, Chris Mungall
    - Re: new GFF3 support methods added, Chris Mungall
    - Unique IDs in bioperl (Was: new GFF3 support methods added), Allen Day
- Re: new GFF3 support methods added, Lincoln Stein
DB.t failures, Hilmar Lapp
- Re: DB.t failures, Hilmar Lapp
- RE: DB.t failures, Roels, Steven
Impressive new discovery: The Virility Patch, lucas
CpG frequency, Gyoergy Abrusan
- Re: CpG frequency, richard sucgang phd
- RE: CpG frequency, Brian Osborne
  - RE: CpG frequency, Kevin Roland Viel
bl2seq overflow, Alexandre Irrthum
- Re: bl2seq overflow, Matthias Wahl
  - Re: bl2seq overflow, Jason Stajich
    - Re: bl2seq overflow, Matthias Wahl
- Re: bl2seq overflow, Jason Stajich
36 H0UR V1=AG-RA, berry
Unusual behaviour of SeqIO::tigr, Morten Lindow
- Re: Unusual behaviour of SeqIO::tigr, Josh Lauricha
  - Re: Unusual behaviour of SeqIO::tigr, Morten Lindow
    - Re: Unusual behaviour of SeqIO::tigr, Josh Lauricha
getting a subtree, Jason Stajich
- Re: getting a subtree, Devin Scannell
Getting values from a GenBank File, Barry Moore
- Re: Getting values from a GenBank File, Heikki Lehvaslaiho
  - Re: Getting values from a GenBank File, Barry Moore
- RE: Getting values from a GenBank File, Brian Osborne
  - Re: Getting values from a GenBank File, Barry Moore
Bioperl-DB error, Law, Annie
- Re: Bioperl-DB error, Hilmar Lapp
Broken link in bptutorial, Susan J. Miller
- RE: Broken link in bptutorial, Brian Osborne
This Drug puts VlAGRA to shame!!, johnnie
RE: Clickable Glyphs..., Agrin, Nathan
PubMed and UTF8, Thomas Götz
- Re: PubMed and UTF8, Allen Day
REPLY SOON, mbatesalann
- REPLY SOON, mbatealann
- REPLY SOON, MRBATESALANN
RE[2]: earn ., Franklin Wilkerson
Save up to 80% on your medications!, dean
- Save up to 80% on your medications!, jesse
- Save up to 80% on your medications!, buford
Functionality of Bio::DB::Flat module, Siddhartha Basu
Small word sizes with BLAST (WU, NCBI), Andrew Walsh
- RE: Small word sizes with BLAST (WU, NCBI), Joseph Bedell
  - Re: [ssml] RE: Small word sizes with BLAST (WU, NCBI), Kevin Karplus
  - Re: [ssml] RE: Small word sizes with BLAST (WU, NCBI), Dan Bolser
Bio::Graphics::Glyph::translation.pm, Dr. Todd Naumann
- Re: Bio::Graphics::Glyph::translation.pm, Lincoln Stein
  - Re: Bio::Graphics::Glyph::translation.pm, Jason Stajich
    - Re: Bio::Graphics::Glyph::translation.pm, Lincoln Stein
    - GD::SVG, hz5
    - Re: GD::SVG, Todd Harris
  - Re: Bio::Graphics::Glyph::translation.pm, Ewan Birney
Validate Fasta, michael watson (IAH-C)
- Re: Validate Fasta, john herbert
  - Re: Validate Fasta, Andreas Kahari
- RE: Validate Fasta, michael watson (IAH-C)
- RE: Validate Fasta, john herbert
  - Message not available
    - Re: Validate Fasta, James Wasmuth
Root::IO tempfile error, Charles Hauser
- RE: Root::IO tempfile error, Marc Logghe
RemoteBlast VS Traditional Browser Blast, Andy Hammer
- RemoteBlast VS Traditional Browser Blast, Richard Adams
- RemoteBlast VS Traditional Browser Blast, facemann
- RemoteBlast VS Traditional Browser Blast, facemann
- RemoteBlast VS Traditional Browser Blast, Richard Adams
- RemoteBlast VS Traditional Browser Blast, andy hammer
- RemoteBlast VS Traditional Browser Blast, facemann
Partial BioPerl installations, john herbert
- Re: Partial BioPerl installations, Heikki Lehvaslaiho
- Re: Partial BioPerl installations, john herbert
- Re: Partial BioPerl installations, john herbert
Trace coordinates from scf files, SRMD, Col - Underwood, Anthony
- Re: Trace coordinates from scf files, Chad Matsalla
Sequence search, KHOUEIRY pierre
- Re: Sequence search, Heikki Lehvaslaiho
- Sequence search, facemann
8 times longer than V_I A_G R_A??, mauro
- 8 times longer than V_I A_G R_A??, emory
Problems with BioPerl-1.4, Wolf-Gerolf Thies
Re: undef strand and biosql, Hilmar Lapp
Fetching > 500 sequences, henrik nilsson
- Re: Fetching > 500 sequences, martin
  - Re: Fetching > 500 sequences, Brad Chapman
    - RE: Fetching > 500 sequences, Brian Osborne
- Re: Fetching > 500 sequences, henrik nilsson
  - Re: Fetching > 500 sequences, Paulo Almeida
    - Re: Fetching > 500 sequences, Lincoln Stein
Traces as X, Y coordinates, SRMD, Col - Underwood, Anthony
Question, Jonathan Greenwood
Re: bioperl graphics, Jonathan Crabtree
- Re: bioperl graphics, Todd Harris
  - Re: bioperl graphics, Jonathan Crabtree
new Bio::Installer modules in bioperl-run, avilella
- Re: new Bio::Installer modules in bioperl-run, Todd Harris
  - Re: new Bio::Installer modules in bioperl-run, avilella
load_seqdatabase.pl problem, Eric Bazin
- Re: load_seqdatabase.pl problem, Hilmar Lapp
Bio::PopGen::Statistics discrete calculations, avilella
- Re: Fwd: Bio::PopGen::Statistics discrete calculations, Matthew Hahn
  - Re: Fwd: Bio::PopGen::Statistics discrete calculations, avilella
MDaemon Notification -- Attachment Removed, Postmaster