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Re: desc in fasqta names: msg#00351

Subject: Re: desc in fasqta names
Gilles,

function desc 'GET/SET description for your sequence'
so you can easily put a blank description in your script:

$seq->desc('');


Remo

On Mar 29, 2004, at 3:48 PM, Gilles Parmentier wrote:

Hello all,

I'm using SeqIO to transform a genbank file in a fasta file. I don't want to have the result of a desc call in the fasta name, how can I do that ? My problem seems to come from those lines in SeqIO/fasta.pm (write_seq) :

       if ($seq->can('desc') and my $desc = $seq->desc()) {
           $desc =~ s/\n//g;
           $top .= " $desc";
       }

How can I turn this feature off ?

Thanks in advance for your help,

Gilles
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