lang.perl.bio.general (thread)

36 H0UR V1=AG-RA, clint
D-r-u-g lasts 8 times longer than V_I_A_G_R_A?!, wiley
Su-per V 1 A-G R A, kendall
8 times longer than V_I A_G R_A??, felix
RE: OT: Breadth-First Search Algorithm - BFS, Nathan \(Nat\) Goodman
- RE: OT: Breadth-First Search Algorithm - BFS, Roels, Steven
  - Re: OT: Breadth-First Search Algorithm - BFS, Hilmar Lapp
Re: Windows PPM for Bioperl 1.4, Chris Fields
Re: [Gmod-schema] install problems, continued (fwd), Jason Stajich
- Re: Re: [Gmod-schema] install problems, continued (fwd), Jason Stajich
Making gff files for ucsc or ncbi build, Sean Davis
Breadth-First Search Algorithm - BFS, Jose Mª Glez Izarzugaza
- OT: Breadth-First Search Algorithm - BFS, Jeremy Semeiks
Federal Provincial Subsidies, Info
Mysql database connection from Gbrowse, Sean Davis
- Re: Mysql database connection from Gbrowse, Lincoln Stein
DBFetch problem, Brian Osborne
bioperl-1.4 ppm package for Windows, Chris Fields
- Re: bioperl-1.4 ppm package for Windows, Lincoln Stein
  - Re: bioperl-1.4 ppm package for Windows, Chris Fields
    - RE: bioperl-1.4 ppm package for Windows, Brian Osborne
    - RE: bioperl-1.4 ppm package for Windows, Chris Fields
- RE: bioperl-1.4 ppm package for Windows, Brian Osborne
CPAN install, Dave Howorth
- Re: CPAN install, Dave Howorth
  - RE: Re: CPAN install, Brian Osborne
- RE: CPAN install, Brian Osborne
  - Re: CPAN install, Dave Howorth
    - RE: CPAN install, Brian Osborne
Gbrowse DAS support, Sean Davis
Command-line Psiblast using NCBI blastpgp, Xiang Deng
- Re: Command-line Psiblast using NCBI blastpgp, Aaron J. Mackey
Re: Fwd: nucleic acid melting temperature, Barry Moore
- Re: Re: Fwd: nucleic acid melting temperature, Rob Edwards
Bioperl graphics, hz5
- bioperl graphics, hz5
  - Re: bioperl graphics, Jonathan Crabtree
    - Re: bioperl graphics, Lincoln Stein
    - Re: bioperl graphics, Todd Harris
Re: [BioC] Questions about multtest, Sean Davis
neighbor.pm, Elizabeth Williams
- Re: neighbor.pm, Jason Stajich
  - Message not available
    - Re: neighbor.pm, Elizabeth Williams
    - Message not available
    - Message not available
    - Re: neighbor.pm, Jason Stajich
<AUTHOR_LIST> missing, matthieu CONTE
Drug lasts longer than VIAGR@?, gerardo
Re: inferring exon features in SeqFeature::Tools::Unflattener - an improvement?, Chris Mungall
StandAloneBlast.pm, bl2seq() and tempfiles on Win32/cygwin, Aaron J. Mackey
- RE: StandAloneBlast.pm, bl2seq() and tempfiles on Win32/cygwin, Brian Osborne
- Re: StandAloneBlast.pm, bl2seq() and tempfiles on Win32/cygwin, Aaron J. Mackey
- RE: StandAloneBlast.pm, bl2seq() and tempfiles on Win32/cygwin, Marc Logghe
  - RE: StandAloneBlast.pm, bl2seq() and tempfiles on Win32/cygwin, Brian Osborne
inferring exon features in SeqFeature::Tools::Unflattener, Cook, Malcolm
Help with reversing a sequence, Paul St. Amand
- Re: Help with reversing a sequence, Jason Stajich
- Help with reversing a sequence, Paul St. Amand
Bio::Tools::GFF use of seqname, Cook, Malcolm
- Re: Bio::Tools::GFF use of seqname, Hilmar Lapp
  - use of seq_id. was: Bio::Tools::GFF use of seqname, Dave Howorth
    - Re: use of seq_id. was: Bio::Tools::GFF use of seqname, Hilmar Lapp
- RE: Bio::Tools::GFF use of seqname, Cook, Malcolm
  - Re: Bio::Tools::GFF use of seqname, Hilmar Lapp
BioQuery failure, Eric Bazin
- Re: BioQuery failure, Hilmar Lapp
help with Bioperl, Parvesh
- aa -> dna alignment (was: help with Bioperl), Jason Stajich
- RE: help with Bioperl, Lin, Xiaoying
bioperl on Mac OS X, Koen van der Drift
- Re: bioperl on Mac OS X, Ewan Birney
- bioperl on Mac OS X, Paul St. Amand
Lose Fat, Gain Muscle with HGH!!!, bryon
- Lose Fat, Gain Muscle with HGH!!!, isaiah
Increase your metabolism!, valentin
quick question, Shawn Hoon
- Re: quick question, Jason Stajich
  - Re: quick question, Shawn Hoon
Problem with Bio::Factor::EMBOSS, Susan J. Miller
- Re: Problem with Bio::Factor::EMBOSS, Jason Stajich
MSG: acc does not exist, but acc is OK and bioperl version is 1.2.2, Vince Forgetta
- Re: MSG: acc does not exist, but acc is OK and bioperl version is 1.2.2, Andreas Kahari
  - Re: MSG: acc does not exist, but acc is OK and bioperl version is 1.2.2, Vince Forgetta
    - Re: MSG: acc does not exist, but acc is OK and bioperl version is 1.2.2, Jason Stajich
    - Re: MSG: acc does not exist, but acc is OK and bioperl version is 1.2.2, Vince Forgetta
Version 1.4 for Windows, Brian Osborne
- Re: Version 1.4 for Windows, Chris Fields
Tm calculation, Sebastian Bassi
- Message not available
  - Re: Tm calculation, Sebastian Bassi
REPLY SOON, MRBATESALANN
- REPLY SOON, MRBATESALANN
Re: [Fwd: Re: Bio::SeqFeature::Primer Calculating the Primer TM], Barry Moore
More help...., Jonathan Greenwood
Subject length using BPlite.pm, Adam Witney
- Re: Subject length using BPlite.pm, Jason Stajich
The Drug that puts VIAGR@ to shame!, antoine
- The Drug that puts VIAGR@ to shame!, stephen
A D-r-u-g more potent than VIAG-RA?!, shawn
Re: Bio::Prospect, Neil Saunders
- Re: Re: Bio::Prospect, Reece Hart
Bio::Prospect:: -- a Perl interface to Prospect protein threading, Reece Hart
Bio::Graphics::Browser::Markup, Barry Moore
- Re: Bio::Graphics::Browser::Markup, Jason Stajich
  - Re: Bio::Graphics::Browser::Markup, Todd Harris
- Re: Bio::Graphics::Browser::Markup, Lincoln Stein
- Re: Bio::Graphics::Browser::Markup, Scott Cain
SGD GFF3 file available soon, Stan Dong
- Re: SGD GFF3 file available soon, Jason Stajich
- Re: SGD GFF3 file available soon, Scott Cain
  - Re: SGD GFF3 file available soon, Stan Dong
Pretty Output of Alignments, Barry Moore
- Pretty Output of Alignments, Barry Moore
Clickable Glyphs..., Jonathan Greenwood
- Re: Clickable Glyphs..., Josh Lauricha
- Re: Clickable Glyphs..., Lincoln Stein
Re: get sequence failure (fwd), Jason Stajich
Re: Bio::SeqFeature::Primer Calculating the Primer TM, john herbert
gap characters in SimpleAlign objects, Nathan Haigh
- Re: gap characters in SimpleAlign objects, Ewan Birney
  - Re: gap characters in SimpleAlign objects, Jason Stajich
    - RE: gap characters in SimpleAlign objects, Nathan Haigh
- Re: gap characters in SimpleAlign objects, Jason Stajich
Blast results question, Sean Davis
- Re: Blast results question, Jason Stajich
  - Re: Blast results question, Sean Davis
AlignIO warning, Alexandre Irrthum
- Re: AlignIO warning, Jason Stajich
Re: BOSC 2004, Lincoln Stein
msf output, Wes Barris
- Re: msf output, Jason Stajich
searchio scripts, Richard Rouse
- Re: searchio scripts, Jason Stajich
- Re: searchio scripts, Steve Chervitz
  - Re: searchio scripts, Lincoln Stein
    - Re: searchio scripts, Steve Chervitz
    - RE: searchio scripts, Richard Rouse
    - Re: searchio scripts, Steve Chervitz Trutane
    - RE: searchio scripts, Richard Rouse
Bio::DB::GFF::Aggregator problem, new wormbase models., Philip MacMenamin
- Re: Bio::DB::GFF::Aggregator problem, new wormbase models., Todd Harris
  - Re: Bio::DB::GFF::Aggregator problem, new wormbase models., Lincoln Stein
  - Re: Bio::DB::GFF::Aggregator problem, new wormbase models., Philip MacMenamin
  - Re: Bio::DB::GFF::Aggregator problem, new wormbase models., Philip MacMenamin
Re: [BioPython] Re: Bio::SeqFeature::Primer Calculating the Primer TM (fwd), Jason Stajich
New GO Parser and errors loading biosql database, Law, Annie
- Re: New GO Parser and errors loading biosql database, Hilmar Lapp
- RE: New GO Parser and errors loading biosql database, Law, Annie
  - Re: New GO Parser and errors loading biosql database, Hilmar Lapp
get_Seq_by_id: CONTIG found, Aerts, Jan
Re: Bio::SeqFeature::Primer Calculating the Primer TM, john herbert
- Re: Bio::SeqFeature::Primer Calculating the Primer TM, Jason Stajich
  - [BioPython] Re: [Bioperl-l] Bio::SeqFeature::Primer Calculating the Primer TM, Brad Chapman
- Re: Bio::SeqFeature::Primer Calculating the Primer TM, Barry Moore
  - Re: Bio::SeqFeature::Primer Calculating the Primer TM, Rob Edwards
align and profile_align, Liu Haifeng
Bio::SeqFeature::Primer Calculating the Primer TM, john herbert
- Re: Bio::SeqFeature::Primer Calculating the Primer TM, Rob Edwards
ace.pm, Wes Barris
- Re: ace.pm, Jason Stajich
  - Re: ace.pm, Wes Barris
- RE: ace.pm, Marc Logghe
  - Re: ace.pm, Peter van Heusden
- RE: ace.pm, Marc Logghe
  - Re: ace.pm, Wes Barris
Bug in GCG SeqIO Formatting?, Tex Thompson
- Re: Bug in GCG SeqIO Formatting?, Hilmar Lapp
  - Re: Bug in GCG SeqIO Formatting?, Tex Thompson
get sequence failure, william ritchie
- Re: get sequence failure, Jason Stajich
- Re: get sequence failure, Andrew Walsh
  - Re: get sequence failure, Sebastien Moretti
Bioperl and ACE files, Wes Barris
- Re: Bioperl and ACE files, Jason Stajich
  - Re: Bioperl and ACE files, Wes Barris
Validating Bioperl, Peter van Heusden
Does Bio::Tools::Glimmer only parse GlimmerM?, David Arndt
Creating imagemaps from Bio::Graphics (Was Re: Bio::Graphics questions), Lincoln Stein
Forget V1AGRA, there's a new game in town!, royce
- Forget V1AGRA, there's a new game in town!, milford
- Forget V1AGRA, there's a new game in town!, rodrick
Re: Bundle-Bioperl installation under Activestate, Chris Dagdigian
- Re: Re: Bundle-Bioperl installation under Activestate, Barry Moore
- Re: Re: Bundle-Bioperl installation under Activestate, Lincoln Stein
Strangeness in bioperl-1.4::Bio::DB::GFF::Segment...?, Philip MacMenamin
- Re: Strangeness in bioperl-1.4::Bio::DB::GFF::Segment...?, Lincoln Stein
Locuslink parser, Law, Annie
- Fasta Genome Splice, David Clark
  - Re: Fasta Genome Splice, Jason Stajich
    - Re: Fasta Genome Splice, David Clark
    - Re: Fasta Genome Splice, Ryan Kuykendall
    - Re: Fasta Genome Splice, Lincoln Stein
    - Re: Fasta Genome Splice, Jason Stajich
    - Re: Fasta Genome Splice, David Clark
- Re: Locuslink parser, Hilmar Lapp
- RE: Locuslink parser, Law, Annie
  - RE: Locuslink parser, Brian Osborne
  - Re: Locuslink parser, Hilmar Lapp
GO identifiers being mis-parsed? Was Re: Building biosql database errors, Sean Davis
- Re: GO identifiers being mis-parsed? Was Re: Building biosql database errors, Hilmar Lapp
Mail delivery failed: returning message to sender, Mail Delivery System
- Mail delivery failed: returning message to sender, Mail Delivery System
- Mail delivery failed: returning message to sender, Mail Delivery System
Bioperl-db make test failures, Adam Witney
- Re: Bioperl-db make test failures, Hilmar Lapp
  - Re: Bioperl-db make test failures, Adam Witney
    - Re: Bioperl-db make test failures, Hilmar Lapp
    - Re: Bioperl-db make test failures, Adam Witney
Building biosql database errors, Sean Davis
- Re: Building biosql database errors, Andreas Bernauer
- Re: Building biosql database errors, Hilmar Lapp
failure notice, MAILER-DAEMON
- failure notice, MAILER-DAEMON
The COWI antivirus system found VIRUS= Win32/Mydoom.A.Worm (CA(InoculateIT), CA(Vet), Norman, Sophos), Antigen_LYCON1
Returned mail: see transcript for details, Mail Delivery Subsystem
Remote BLAST returning lots of 500 time out errors, Richard Adams
- Re: Remote BLAST returning lots of 500 time out errors, Barry Moore
Remote BLAST returning lots of 500 time out Remote BLAST returning lots of 500 time outerrors, Richard Adams
ScanMail Message: To Sender virus found and action taken., Administrator
Problems running remote blast, Hong Ching Lee
- Problems running remote blast, Richard Adams
Subject : Virus Detected in "Hi", postmaster
[Bloqueio] Mensagem bloqueada - Blocked e-mail, sti
question on simple align object, Michael Cipriano
- RE: question on simple align object, Brian Osborne
- Re: question on simple align object, Shawn Hoon
- Remote BLAST returning lots of 500 time out errors, Barry Moore
Computing Allele Frequency From Heterozygosity, Eric Wang
- Re: Computing Allele Frequency From Heterozygosity, Heikki Lehvaslaiho
Sub Seq Feature help, michael watson (IAH-C)
- RE: Sub Seq Feature help, Brian Osborne
- RE: Sub Seq Feature help, Marc Logghe
protein networks, Richard Adams
- Re: protein networks, Allen Day
fetching a fasta file, KHOUEIRY pierre
- RE: fetching a fasta file, Marc Logghe
This Drug puts VlAGRA to shame!!, stacey
- This Drug puts VlAGRA to shame!!, curtis
- This Drug puts VlAGRA to shame!!, justin
Problems running blast, Hong Ching Lee
- Re: Problems running blast, Barry Moore
- Re: Problems running blast, James Wasmuth
Re: CVS hang problem, T.D. Houfek
oligos, mRNAs, and genes, T.D. Houfek
GD test 10 fails, Chet Langin
- Re: GD test 10 fails, Jason Stajich
  - Re: GD test 10 fails, Chet Langin
- Re: GD test 10 fails, Lincoln Stein
  - Message not available
    - Re: GD test 10 fails, Lincoln Stein
    - Re: GD test 10 fails, Chet Langin
Fwd: Error running makefile, reveritt
Parsing blast hits, Sean Davis
mouse genome, william ritchie
Blast Images, michael watson (IAH-C)
- Re: Blast Images, Jason Stajich
- RE: Blast Images, Brian Osborne
- Re: Blast Images, Eckhard Lehmann
problem with neighbor.pm, Elizabeth Williams
- Re: problem with neighbor.pm, Jason Stajich
  - Message not available
    - Re: problem with neighbor.pm, Jason Stajich
genome analysis, Liam Elbourne
Re: Bio::Species / Bio::Taxonomy::Node, Jason Stajich
- RE: Bio::Species / Bio::Taxonomy::Node, Brian Osborne
  - RE: Bio::Species / Bio::Taxonomy::Node, Jason Stajich
RE: Difference between, Wiepert, Mathieu
- RE: Difference between, Jason Stajich
Splice site, william ritchie
- Uniprot, Sebastien Moretti
  - RE: Uniprot, Brian Osborne
    - Re: Uniprot, Eric Jain
    - Uniprot, Sebastien Moretti
    - Re: Uniprot, Jason Stajich
  - Re: Uniprot, Heikki Lehvaslaiho
Stronger than V1AGRA?!, mauricio
- Stronger than V1AGRA?!, cody
sukper viagrma, Help
Bio::Ontology - parsing GO files, James Mitchell
- Re: Bio::Ontology - parsing GO files, Hilmar Lapp
Re: Bio ::seqIO ::tigr, matthieu CONTE
- Re: Bio ::seqIO ::tigr, Hilmar Lapp
- Re: Bio ::seqIO ::tigr, Jay Moore
  - Re: Re: Bio ::seqIO ::tig, Josh Lauricha
- Re: Re: Bio ::seqIO ::tigr, Josh Lauricha
  - Re: Re: Bio ::seqIO ::tigr, Hilmar Lapp
working with large alignments, Heikki Lehvaslaiho
Re: Testing BioPerl objects for equality, Bernhard Schmalhofer
- Re: Testing BioPerl objects for equality, Lincoln Stein
Re: Filehandle interface in Bio::AlignIO: broken in 1.4?, Lincoln Stein
Re: Bio::UnivAln mourned, Koen van der Drift