lang.perl.bio.general (date)

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lang.perl.bio.general (date)

February 29, 2004

36 H0UR V1=AG-RA, clint
D-r-u-g lasts 8 times longer than V_I_A_G_R_A?!, wiley
Su-per V 1 A-G R A, kendall

February 28, 2004

Re: OT: Breadth-First Search Algorithm - BFS, Hilmar Lapp
Re: Re: Bio ::seqIO ::tigr, Hilmar Lapp
8 times longer than V_I A_G R_A??, felix

February 27, 2004

RE: OT: Breadth-First Search Algorithm - BFS, Roels, Steven
RE: OT: Breadth-First Search Algorithm - BFS, Nathan \(Nat\) Goodman
Re: Re: [Gmod-schema] install problems, continued (fwd), Jason Stajich
RE: bioperl-1.4 ppm package for Windows, Brian Osborne
Re: Windows PPM for Bioperl 1.4, Chris Fields
Re: [Gmod-schema] install problems, continued (fwd), Jason Stajich
OT: Breadth-First Search Algorithm - BFS, Jeremy Semeiks
RE: bioperl-1.4 ppm package for Windows, Chris Fields
Making gff files for ucsc or ncbi build, Sean Davis
RE: bioperl-1.4 ppm package for Windows, Brian Osborne
Re: bioperl-1.4 ppm package for Windows, Chris Fields
Re: bioperl graphics, Todd Harris
Re: Re: Bio ::seqIO ::tigr, Josh Lauricha
Re: Mysql database connection from Gbrowse, Lincoln Stein
Breadth-First Search Algorithm - BFS, Jose Mª Glez Izarzugaza
Re: bioperl-1.4 ppm package for Windows, Lincoln Stein
Re: bioperl graphics, Lincoln Stein
Forget V1AGRA, there's a new game in town!, rodrick

February 26, 2004

Federal Provincial Subsidies, Info
Mysql database connection from Gbrowse, Sean Davis
DBFetch problem, Brian Osborne
Forget V1AGRA, there's a new game in town!, milford

February 25, 2004

bioperl-1.4 ppm package for Windows, Chris Fields
Re: bioperl graphics, Jonathan Crabtree
RE: Re: CPAN install, Brian Osborne
RE: CPAN install, Brian Osborne
bioperl graphics, hz5
Re: CPAN install, Dave Howorth
RE: CPAN install, Brian Osborne
Re: CPAN install, Dave Howorth
CPAN install, Dave Howorth
Gbrowse DAS support, Sean Davis
Re: use of seq_id. was: Bio::Tools::GFF use of seqname, Hilmar Lapp
Re: Re: Fwd: nucleic acid melting temperature, Rob Edwards
Re: Re: Bio ::seqIO ::tig, Josh Lauricha

February 24, 2004

Re: Command-line Psiblast using NCBI blastpgp, Aaron J. Mackey
Command-line Psiblast using NCBI blastpgp, Xiang Deng
Help with reversing a sequence, Paul St. Amand
Re: Fwd: nucleic acid melting temperature, Barry Moore
Re: neighbor.pm, Jason Stajich
The Drug that puts VIAGR@ to shame!, stephen
RE: StandAloneBlast.pm, bl2seq() and tempfiles on Win32/cygwin, Brian Osborne
Bioperl graphics, hz5
RE: StandAloneBlast.pm, bl2seq() and tempfiles on Win32/cygwin, Marc Logghe
Re: StandAloneBlast.pm, bl2seq() and tempfiles on Win32/cygwin, Aaron J. Mackey
Re: Bio ::seqIO ::tigr, Jay Moore
Re: [BioC] Questions about multtest, Sean Davis
RE: StandAloneBlast.pm, bl2seq() and tempfiles on Win32/cygwin, Brian Osborne
Re: neighbor.pm, Elizabeth Williams
Re: neighbor.pm, Jason Stajich
neighbor.pm, Elizabeth Williams
use of seq_id. was: Bio::Tools::GFF use of seqname, Dave Howorth
<AUTHOR_LIST> missing, matthieu CONTE
Drug lasts longer than VIAGR@?, gerardo
Re: Bio::Tools::GFF use of seqname, Hilmar Lapp

February 23, 2004

Re: inferring exon features in SeqFeature::Tools::Unflattener - an improvement?, Chris Mungall
Re: Bio::DB::GFF::Aggregator problem, new wormbase models., Philip MacMenamin
StandAloneBlast.pm, bl2seq() and tempfiles on Win32/cygwin, Aaron J. Mackey
inferring exon features in SeqFeature::Tools::Unflattener, Cook, Malcolm
RE: Bio::Tools::GFF use of seqname, Cook, Malcolm
Re: Help with reversing a sequence, Jason Stajich
Re: Bio::Tools::GFF use of seqname, Hilmar Lapp
Re: BioQuery failure, Hilmar Lapp
bioperl on Mac OS X, Paul St. Amand
Help with reversing a sequence, Paul St. Amand
Bio::Tools::GFF use of seqname, Cook, Malcolm
RE: help with Bioperl, Lin, Xiaoying
failure notice, MAILER-DAEMON
BioQuery failure, Eric Bazin
Lose Fat, Gain Muscle with HGH!!!, isaiah

February 22, 2004

This Drug puts VlAGRA to shame!!, justin
aa -> dna alignment (was: help with Bioperl), Jason Stajich
help with Bioperl, Parvesh
Mail delivery failed: returning message to sender, Mail Delivery System
Re: Tm calculation, Sebastian Bassi

February 21, 2004

Re: bioperl on Mac OS X, Ewan Birney
bioperl on Mac OS X, Koen van der Drift
Lose Fat, Gain Muscle with HGH!!!, bryon
Increase your metabolism!, valentin

February 20, 2004

Re: quick question, Shawn Hoon
REPLY SOON, MRBATESALANN
Re: quick question, Jason Stajich
quick question, Shawn Hoon
Re: Problem with Bio::Factor::EMBOSS, Jason Stajich
Problem with Bio::Factor::EMBOSS, Susan J. Miller
Re: Version 1.4 for Windows, Chris Fields
Re: MSG: acc does not exist, but acc is OK and bioperl version is 1.2.2, Vince Forgetta
Re: MSG: acc does not exist, but acc is OK and bioperl version is 1.2.2, Jason Stajich
Re: MSG: acc does not exist, but acc is OK and bioperl version is 1.2.2, Vince Forgetta
Re: MSG: acc does not exist, but acc is OK and bioperl version is 1.2.2, Andreas Kahari
MSG: acc does not exist, but acc is OK and bioperl version is 1.2.2, Vince Forgetta
Version 1.4 for Windows, Brian Osborne
Re: New GO Parser and errors loading biosql database, Hilmar Lapp
Tm calculation, Sebastian Bassi
RE: searchio scripts, Richard Rouse
REPLY SOON, MRBATESALANN
Re: searchio scripts, Steve Chervitz Trutane

February 19, 2004

Re: [Fwd: Re: Bio::SeqFeature::Primer Calculating the Primer TM], Barry Moore
RE: New GO Parser and errors loading biosql database, Law, Annie
Re: Re: Bio::Prospect, Reece Hart
More help...., Jonathan Greenwood
Re: Subject length using BPlite.pm, Jason Stajich
Re: Bio::Graphics::Browser::Markup, Todd Harris
Subject length using BPlite.pm, Adam Witney
Re: Clickable Glyphs..., Lincoln Stein
Re: Bio::Graphics::Browser::Markup, Lincoln Stein
Re: SGD GFF3 file available soon, Stan Dong
The Drug that puts VIAGR@ to shame!, antoine
A D-r-u-g more potent than VIAG-RA?!, shawn
Re: Bio::Graphics::Browser::Markup, Scott Cain
Re: SGD GFF3 file available soon, Scott Cain
Re: Bio::Prospect, Neil Saunders
Bio::Prospect:: -- a Perl interface to Prospect protein threading, Reece Hart
Re: Bio::Graphics::Browser::Markup, Jason Stajich
Bio::Graphics::Browser::Markup, Barry Moore

February 18, 2004

RE: searchio scripts, Richard Rouse
Re: SGD GFF3 file available soon, Jason Stajich
SGD GFF3 file available soon, Stan Dong
Pretty Output of Alignments, Barry Moore
Pretty Output of Alignments, Barry Moore
Re: searchio scripts, Steve Chervitz
Re: Clickable Glyphs..., Josh Lauricha
Re: Bio::DB::GFF::Aggregator problem, new wormbase models., Philip MacMenamin
Clickable Glyphs..., Jonathan Greenwood
RE: gap characters in SimpleAlign objects, Nathan Haigh
Re: AlignIO warning, Jason Stajich
Re: Blast results question, Sean Davis
Re: Blast results question, Jason Stajich
Re: gap characters in SimpleAlign objects, Jason Stajich
Re: gap characters in SimpleAlign objects, Jason Stajich
Re: get sequence failure (fwd), Jason Stajich
Re: gap characters in SimpleAlign objects, Ewan Birney
Re: Bio::SeqFeature::Primer Calculating the Primer TM, john herbert
gap characters in SimpleAlign objects, Nathan Haigh
Blast results question, Sean Davis
Re: searchio scripts, Lincoln Stein
AlignIO warning, Alexandre Irrthum
Re: searchio scripts, Steve Chervitz
Re: BOSC 2004, Lincoln Stein
Re: Bio::DB::GFF::Aggregator problem, new wormbase models., Lincoln Stein
Re: New GO Parser and errors loading biosql database, Hilmar Lapp
Re: msf output, Jason Stajich
Mail delivery failed: returning message to sender, Mail Delivery System
Re: Bio::SeqFeature::Primer Calculating the Primer TM, Barry Moore
Re: searchio scripts, Jason Stajich
msf output, Wes Barris
Re: Bio::SeqFeature::Primer Calculating the Primer TM, Rob Edwards

February 17, 2004

searchio scripts, Richard Rouse
Re: ace.pm, Wes Barris
Re: Bio::DB::GFF::Aggregator problem, new wormbase models., Todd Harris
Bio::DB::GFF::Aggregator problem, new wormbase models., Philip MacMenamin
Re: [BioPython] Re: Bio::SeqFeature::Primer Calculating the Primer TM (fwd), Jason Stajich
New GO Parser and errors loading biosql database, Law, Annie
Re: Bio::SeqFeature::Primer Calculating the Primer TM, Jason Stajich
[BioPython] Re: [Bioperl-l] Bio::SeqFeature::Primer Calculating the Primer TM, Brad Chapman
get_Seq_by_id: CONTIG found, Aerts, Jan
RE: ace.pm, Marc Logghe
Re: Bio::SeqFeature::Primer Calculating the Primer TM, john herbert
Re: ace.pm, Peter van Heusden
RE: ace.pm, Marc Logghe
Re: get sequence failure, Sebastien Moretti
Re: Bug in GCG SeqIO Formatting?, Tex Thompson
Re: Bug in GCG SeqIO Formatting?, Hilmar Lapp
Re: Bio::SeqFeature::Primer Calculating the Primer TM, Rob Edwards
Re: ace.pm, Wes Barris
align and profile_align, Liu Haifeng
Re: Bioperl and ACE files, Wes Barris
Re: get sequence failure, Andrew Walsh
Bio::SeqFeature::Primer Calculating the Primer TM, john herbert
Re: ace.pm, Jason Stajich

February 16, 2004

ace.pm, Wes Barris
Bug in GCG SeqIO Formatting?, Tex Thompson
Re: get sequence failure, Jason Stajich
get sequence failure, william ritchie
Stronger than V1AGRA?!, cody
Re: Bioperl and ACE files, Jason Stajich
Re: Re: Bundle-Bioperl installation under Activestate, Lincoln Stein
Bioperl and ACE files, Wes Barris

February 15, 2004

Validating Bioperl, Peter van Heusden
Does Bio::Tools::Glimmer only parse GlimmerM?, David Arndt
Creating imagemaps from Bio::Graphics (Was Re: Bio::Graphics questions), Lincoln Stein
Forget V1AGRA, there's a new game in town!, royce

February 14, 2004

Re: Fasta Genome Splice, David Clark
Re: Re: Bundle-Bioperl installation under Activestate, Barry Moore

February 13, 2004

Re: Bundle-Bioperl installation under Activestate, Chris Dagdigian
Re: Locuslink parser, Hilmar Lapp
RE: Locuslink parser, Brian Osborne
RE: Locuslink parser, Law, Annie
Re: Fasta Genome Splice, Lincoln Stein

February 12, 2004

Re: Fasta Genome Splice, Jason Stajich
Re: Fasta Genome Splice, Ryan Kuykendall
Re: Fasta Genome Splice, David Clark
Re: Fasta Genome Splice, Jason Stajich
Re: Locuslink parser, Hilmar Lapp
Re: Strangeness in bioperl-1.4::Bio::DB::GFF::Segment...?, Lincoln Stein
Strangeness in bioperl-1.4::Bio::DB::GFF::Segment...?, Philip MacMenamin
Fasta Genome Splice, David Clark
Locuslink parser, Law, Annie

February 11, 2004

Re: Bioperl-db make test failures, Adam Witney
Re: Bioperl-db make test failures, Hilmar Lapp
Re: Bioperl-db make test failures, Adam Witney
Re: Bioperl-db make test failures, Hilmar Lapp
Re: Building biosql database errors, Hilmar Lapp
Re: GO identifiers being mis-parsed? Was Re: Building biosql database errors, Hilmar Lapp

February 10, 2004

GO identifiers being mis-parsed? Was Re: Building biosql database errors, Sean Davis
Re: Building biosql database errors, Andreas Bernauer
Mail delivery failed: returning message to sender, Mail Delivery System
Bioperl-db make test failures, Adam Witney
Building biosql database errors, Sean Davis
Problems running remote blast, Richard Adams
failure notice, MAILER-DAEMON

February 09, 2004

The COWI antivirus system found VIRUS= Win32/Mydoom.A.Worm (CA(InoculateIT), CA(Vet), Norman, Sophos), Antigen_LYCON1
Returned mail: see transcript for details, Mail Delivery Subsystem
Re: Remote BLAST returning lots of 500 time out errors, Barry Moore
Remote BLAST returning lots of 500 time out errors, Richard Adams
This Drug puts VlAGRA to shame!!, curtis
Remote BLAST returning lots of 500 time out Remote BLAST returning lots of 500 time outerrors, Richard Adams
ScanMail Message: To Sender virus found and action taken., Administrator
Problems running remote blast, Hong Ching Lee
Subject : Virus Detected in "Hi", postmaster

February 08, 2004

Remote BLAST returning lots of 500 time out errors, Barry Moore
Re: Computing Allele Frequency From Heterozygosity, Heikki Lehvaslaiho

February 07, 2004

[Bloqueio] Mensagem bloqueada - Blocked e-mail, sti

February 06, 2004

Re: question on simple align object, Shawn Hoon
RE: question on simple align object, Brian Osborne
question on simple align object, Michael Cipriano
RE: Bio::Species / Bio::Taxonomy::Node, Jason Stajich
Re: protein networks, Allen Day
Computing Allele Frequency From Heterozygosity, Eric Wang
Re: GD test 10 fails, Chet Langin
Re: GD test 10 fails, Lincoln Stein
RE: Sub Seq Feature help, Brian Osborne
RE: Sub Seq Feature help, Marc Logghe
Re: Problems running blast, James Wasmuth
Sub Seq Feature help, michael watson (IAH-C)
RE: fetching a fasta file, Marc Logghe
protein networks, Richard Adams
fetching a fasta file, KHOUEIRY pierre
Re: GD test 10 fails, Lincoln Stein
Re: GD test 10 fails, Chet Langin
This Drug puts VlAGRA to shame!!, stacey
Re: Problems running blast, Barry Moore
Problems running blast, Hong Ching Lee
Re: CVS hang problem, T.D. Houfek
oligos, mRNAs, and genes, T.D. Houfek
Re: GD test 10 fails, Jason Stajich
GD test 10 fails, Chet Langin

February 05, 2004

Fwd: Error running makefile, reveritt
Parsing blast hits, Sean Davis
mouse genome, william ritchie
Re: Uniprot, Heikki Lehvaslaiho
Re: Uniprot, Jason Stajich
Uniprot, Sebastien Moretti

February 04, 2004

Re: Blast Images, Eckhard Lehmann
RE: Blast Images, Brian Osborne
Re: Blast Images, Jason Stajich
Re: problem with neighbor.pm, Jason Stajich
Blast Images, michael watson (IAH-C)
Re: problem with neighbor.pm, Jason Stajich
Re: Uniprot, Eric Jain
problem with neighbor.pm, Elizabeth Williams
genome analysis, Liam Elbourne

February 03, 2004

RE: Bio::Species / Bio::Taxonomy::Node, Brian Osborne
Re: Bio::Species / Bio::Taxonomy::Node, Jason Stajich
RE: Uniprot, Brian Osborne
RE: Difference between, Jason Stajich
RE: Difference between, Wiepert, Mathieu
Uniprot, Sebastien Moretti
Splice site, william ritchie
Stronger than V1AGRA?!, mauricio
Re: Testing BioPerl objects for equality, Lincoln Stein
Re: Bio::Ontology - parsing GO files, Hilmar Lapp
sukper viagrma, Help

February 02, 2004

Bio::Ontology - parsing GO files, James Mitchell
Re: Bio ::seqIO ::tigr, Hilmar Lapp
Re: Bio ::seqIO ::tigr, matthieu CONTE
working with large alignments, Heikki Lehvaslaiho
Re: Testing BioPerl objects for equality, Bernhard Schmalhofer
Re: Filehandle interface in Bio::AlignIO: broken in 1.4?, Lincoln Stein

February 01, 2004

Re: Bio::UnivAln mourned, Koen van der Drift

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