My apologies; I misunderstood the question.
Don Jackson
Andreas Bernauer wrote:
Donald G. Jackson wrote:
Hadas Leonov wrote:
I noticed that a psi-blast report only considers new hits if the 0.0 <
E-value < 0.01 (?).
Is there any possibility to change these parameters ? especially the
0.0 limit, cause large query sequences with 60% identity might still
give an e value of 0.0, thereby causing me to miss them completely by
You can set the -h value ($blaster->h()) to adjust the inclusion
threshold for refining the scoring matrix. However, it only takes
expect values - not identity/length - and the expect value can't go
below zero.
I think he meant that evalues that are exactly zero get excluded, as
the threshold is tested with a "lower than" (`<') instead of an "lower
or equal than" (`<=').
Andreas.
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