Here are a couple of really minor things that I picked up recently (and
if I don't send them now, I am bound to forget). I can go ahead and
submit these changes unless there are objections:
Bio::Tools::RemoteBlast
The line
open(SAVEOUT, ">$filename") or $self->throw("cannot open $filename");
should probably be
open(SAVEOUT, ">>$filename") or $self->throw("cannot open $filename");
so that you can put all the BLAST results into one file.
Bio::Matrix::PhylipDist->new
the docs are completely wrong for this because the module was updated
to use the new Matrix::IO system, and if it is called as described in
the docs it should either silently pass this information onto the
correct module (Bio::Matrix::IO) or throw a warning.
Rob
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