lang.perl.bio.general (date)

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lang.perl.bio.general (date)

October 31, 2003

Re: RemoteBlast, paul . boutros
Re: gcg.pm, Hilmar Lapp
Re: gcg.pm, another one, Hilmar Lapp
Re: Glimmer, Jason Stajich
Bio::SeqIO::tigr, Josh Lauricha
Re: How do you create a Bio::Align::AlignI object?, Josh Lauricha
Glimmer, michael watson (IAH-C)
gcg.pm, another one, Derek Gatherer
Re: allowgaps parameter in Bio::SearchIO, Jason Stajich
Re: Restriction Enzyme cuts on Circular plasmids, Rob Edwards
RE: Restriction Enzyme cuts on Circular plasmids, Gray, John
Re: gcg.pm, Jason Stajich
allowgaps parameter in Bio::SearchIO, Daniel Lang
Re: SearchIO::Writer::HTMLResultWriter question, Jason Stajich
Re: default RemoteBlast user agent, Richard Adams
gcg.pm, Derek Gatherer
SearchIO::Writer::HTMLResultWriter question, Daniel Lang
How do you create a Bio::Align::AlignI object?, Wes Barris
Re: Restriction Enzyme cuts on Circular plasmids, Rob Edwards

October 30, 2003

Re: Restriction Enzyme cuts on Circular plasmids, Rob Edwards
RE: Restriction Enzyme cuts on Circular plasmids, Gray, John
RE: Restriction Enzyme cuts on Circular plasmids, Gray, John
Re: perl script to retrieve accession numbers, Andrew Walsh
RE: Restriction Enzyme cuts on Circular plasmids, Brian Osborne
RemoteBlast, Richard Adams
Re: Restriction Enzyme cuts on Circular plasmids, Rob Edwards
Re: Restriction Enzyme cuts on Circular plasmids, Jason Stajich
Re: Restriction Enzyme cuts on Circular plasmids, Rob Edwards

October 29, 2003

perl script to retrieve accession numbers, M V
Restriction Enzyme cuts on Circular plasmids, Gray, John
Re: LargeSeq performance, Jason Stajich
LargeSeq performance, Stefan Kirov
Re: rpsblast from bioperl, Jason Stajich
Re: bioperl-db schema, Jason Stajich
rpsblast from bioperl, Alexandre Irrthum
Re: [Bioperl-guts-l] bioperl commit, Aaron J Mackey
RE: bioperl-db schema, Marc Logghe
how to align the description to glyph, Magic Fang
bioperl-db schema, Natalie Hawkins

October 28, 2003

bug #1546 and BPlite/BPpsilite, Jason Stajich
RE: running T_coffee with bioperl on a windows system, Brian Osborne
Bio::SimpleAlign methods, Richard Adams
RangeI.pm warnings, Luc.Gauthier

October 27, 2003

running T_coffee with bioperl on a windows system, LE GALL Tony
Re: Question on the scf file format, Heikki Lehvaslaiho
RE: :DB::Registry, Brian Osborne
Resume from CAD Specialist / Operator / Drafter, Civil & Structural Designer
Resume from CAD Specialist / Operator / Drafter, Civil & Structural Designer
RE: Codon Table, michael watson (IAH-C)
RE: Codon Table, Marc Logghe
RE: Codon Table, Ewan Birney
RE: Codon Table, michael watson (IAH-C)

October 26, 2003

RE: Help me to deal with "MSG: blastall call crashed: -1blastall ...", Joseph Bedell
Re: tests, Lincoln Stein

October 25, 2003

Re: tests, Heikki Lehvaslaiho
Re: tests, Lincoln Stein
Mechanical & Design E n g i n e e r, Richard's Resume
Mechanical & Design E n g i n e e r, Richard's Resume
Help me to deal with "MSG: blastall call crashed: -1 blastall ...", hcuong
tests, Heikki Lehvaslaiho
Re: Codon Table, Heikki Lehvaslaiho

October 24, 2003

Re: Bio::Graphics::Pictogram, Shawn Hoon
Bio::Graphics::Pictogram, Jack Chen
Re: [BioPerl] Re: What's that number?, Mark Wilkinson
Re: What's that number?, Andrew Walsh
Netwok problem?, Konopnicki, David
ADV: . Resume for JOB or Service, ADV; . Energy Systems & Electrical Design
ADV: . Resume for JOB or Service, ADV; . Energy Systems & Electrical Design
Re: [Gmod-gbrowse] Re: GFF3: preliminary or implemented?, Lincoln Stein
Re: What's that number?, Peter Wilkinson

October 23, 2003

Question re: Phred Base Quality Data & Bio::SeqIO::scf, Cooper, Marc Emmerson
What's that number?, michael
Re: GFF3: preliminary or implemented?, Chris Mungall
Re: GFF3: preliminary or implemented?, Lincoln Stein
GFF3: preliminary or implemented?, Charles Hauser
[Bioperl-guts-l] [Bug 1544] New: Trouble dissecting problem Bio::SeqIO (fwd), Jason Stajich
Re: bioperl-pipeline, D. Joe Anderson
Re: modified Fasta-Headers?, Andreas Boehm
RE: modified Fasta-Headers?, Martin Schenker
modified Fasta-Headers?, Andreas Boehm
modified Fasta-Headers?, Andreas Boehm
[offtopic] Re: Retrieve mail, Andreas Kahari
Re: a space in Feature key, Heikki Lehvaslaiho
Retrieve mail, Ryan Doherty

October 22, 2003

Re: 1.3.02 failed tests, Hilmar Lapp
Re: 1.3.02 failed tests, Allen Day
Re: Bio::Tools::GFF [Re: Bio::SeqFeature::Generic], Jason Stajich
Bio::Tools::GFF [Re: Bio::SeqFeature::Generic], Heikki Lehvaslaiho
RE: Bio::DB::Registry, Brian Osborne
Re: 1.3.02 failed tests, Hilmar Lapp
Re: Bio::SeqIO::kegg, Hilmar Lapp
Re: Bio::DB::Registry, Daniel Lang
Orion BioSolutions Kits, $25 to you with Purchase, billym
Re: 1.3.02 failed tests, Rob Edwards
Re: 1.3.02 failed tests, Hilmar Lapp
Re: 1.3.02 failed tests, Jason Stajich
Re: 1.3.02 failed tests, Hilmar Lapp

October 21, 2003

Bio::SeqFeature::Generic, Charles Hauser
Re: Bio::SeqIO::kegg, Ewan Birney
Bio::SeqIO::kegg, Allen Day

October 20, 2003

RE: Sequence from PDB, Brian Osborne
Sequence from PDB, Mike Muratet
RE: New modules, Brian Osborne
RE: Bio::DB::Registry, Brian Osborne
Re: Phylip format for phylogeny, Richard Copley

October 19, 2003

Re: Phylip format for phylogeny, Jason Stajich
Pise: control on submissions, Catherine Letondal
Re: New modules, Rob Edwards
RE: New modules, Brian Osborne
New modules, Rob Edwards
1.3.02 failed tests, Rob Edwards

October 18, 2003

some tests fail on Mac OS X and Bioperl 1.302, Koen van der Drift
RE: (no subject), Brian Osborne

October 17, 2003

Re: 'Suspicious' headers, chris dagdigian
Phylip format for phylogeny, Mike Muratet
(no subject), velasco
'Suspicious' headers, Michael Muratet
Re: a space in Feature key, Henry Hyun-il Paik
Re: (no subject), Ewan Birney
a space in Feature key in the Feature Table., hyupaik
(no subject), Henry Hyun-il Paik
Re: Codon Table, Heikki Lehvaslaiho
RE: How do you create a genbank file?, Marc Logghe
RE: How do you create a genbank file?, Jason Stajich
RE: How do you create a genbank file?, Marc Logghe
RE: How do you create a genbank file?, Jason Stajich
Re: bioperl mirror at iubio.bio.indiana.edu now daily updated, Heikki Lehvaslaiho
Bioperl Developer snapshot 1.3.02, Heikki Lehvaslaiho
RE: How do you create a genbank file?, Marc Logghe
How do you create a genbank file?, Wes Barris
need a devloper for RemoteBlast (was RemoteBlast: can't get a TaxBlast report), Jason Stajich

October 16, 2003

RemoteBlast: can't get a TaxBlast report, Cannon, William R
Re: installation problems, Hilmar Lapp

October 15, 2003

Re: installation problems, Jason Stajich
installation problems, Richard Rouse
RE: Bio::DB::Registry, Brian Osborne
Re: Bio::DB::Registry, Daniel Lang
RE: Bio::DB::Registry, Brian Osborne
Bio::DB::Registry, Daniel Lang
Re: Codon Table, Jason Stajich
Does bioperl is the answer?, Christiane Nerz
BioPerl programmer opening at Electric Genetics, Tania Broveak Hide
Bioperl parser for Gene Expression Omnibus, Zayed Albertyn
Abandoned GBentries, babenko

October 14, 2003

Re: Bio::Index::PDB, Shawn Hoon
carlos, Carlos Fernandez-Patron
Codon Table, michael watson (IAH-C)
[OBDA] proxy settings., Jérôme Etévé
RE: Bio::Index::PDB, Brian Osborne
Bio::Index::PDB, Shawn Hoon

October 13, 2003

Re: [Bioperl] LocusLink, Hilmar Lapp
Re: [unclassified] Re: [BioPerl] Re: load_gff.pl error, Mark Wilkinson
Re: [BioPerl] Re: load_gff.pl error, Lincoln Stein
[Bioperl] LocusLink, Zayed Albertyn

October 12, 2003

Re: bioperl-pipeline, Shawn Hoon
A script to automagically generate DocBook formatted references. (was : Re: Re: Bio::Biblio), Charles Plessy
Re: search for only C-terminal degenerate motifs, Aaron J Mackey
bioperl-pipeline, William Kenworthy
www.bioperl.org, Sharon Brown
Re: search for only C-terminal degenerate motifs, Lucas Carey

October 11, 2003

Re: Suggestions for MATLAB-Bioperl Interface, Catherine Letondal
Bio::Graphics HOWTO :: about of the color of graph, Koichi Minamijima
Suggestions for MATLAB-Bioperl Interface, Brian Madsen

October 10, 2003

Re: [BioPerl] Re: load_gff.pl error, Sheldon McKay
Re: [BioPerl] Re: load_gff.pl error, Mark Wilkinson
Re: Method dnaseq in EncodedSeq not working properly?, Aaron J. Mackey
Re: [BioPerl] Re: load_gff.pl error, Lincoln Stein
Method dnaseq in EncodedSeq not working properly?, Steffen Grossmann
Re: search for only C-terminal degenerate motifs, Aaron J. Mackey
RE: search for only C-terminal degenerate motifs, Brian Osborne
Re: Problem retrieving peptides using GenPept, Lincoln Stein
RE: Re: [BioSQL-l] Error using load_seqdatabase.pl, Brian Osborne
RE: Re: [BioSQL-l] Error using load_seqdatabase.pl, Robert Roth
RE: Problem retrieving peptides using GenPept, Brian Osborne
Re: Bio::Biblio, Martin Senger
Problem retrieving peptides using GenPept, Palle Villesen

October 09, 2003

search for only C-terminal degenerate motifs, Lucas Carey
Re: [BioPerl] Re: load_gff.pl error, Mark Wilkinson
Re: load_gff.pl error, Lincoln Stein
RE: OS X bioperl, staden/read, install problems, Jim Nolan
load_gff.pl error, Vamsi
RE: cvs access problems?, Roels, Steven
cvs access problems?, Roels, Steven
RE: Re: [BioSQL-l] Error using load_seqdatabase.pl, Brian Osborne
RE: Re: [BioSQL-l] Error using load_seqdatabase.pl, Robert Roth
Re: HTMLResultWriter questions, Oliver Wafzig
Re: [BioSQL-l] Error using load_seqdatabase.pl, Hilmar Lapp

October 08, 2003

RE: OS X bioperl, staden/read, install problems, Aaron J Mackey
Re: [BioSQL-l] Error using load_seqdatabase.pl, Hilmar Lapp
HTMLResultWriter questions, Daniel Lang
Re: Asking for help on the bioperl mailing list. WAS: seqIO, Hilmar Lapp
Asking for help on the bioperl mailing list. WAS: seqIO, Lincoln Stein
RE: seqIO, Jason Stajich
Re: seqIO, Shawn Hoon
RE: seqIO, Desmond Lim

October 07, 2003

Re: seqIO, Lincoln Stein
Re: bioperl-db: Updating existing Databases with load_seqdatabase.pl and load_ontology, Hilmar Lapp
Fwd: having problems with abi.pm, Aaron J. Mackey
Re: bp 1.2.3 ppm install fails, Lincoln Stein
bioperl-db: Updating existing Databases with load_seqdatabase.pl and load_ontology, Raphael A. Bauer
PPM Install for libxml-perl, Nigam Shah
Re: RE: [Pubmednew] Problem with esearch.fcgi, Jason Stajich
Re: bp 1.2.3 ppm install fails, Lincoln Stein
RE: bp 1.2.3 ppm install fails, Chris Fields
RE: bp 1.2.3 ppm install fails, Scott Cain
RE: How can i get ..., Marc Logghe
Re: RE: [Pubmednew] Problem with esearch.fcgi, Andrew Walsh
How can i get ..., Fabiola Sánchez
RE: Bio::Biblio, Brian Osborne
RE: bp 1.2.3 ppm install fails, Brian Osborne
Homologene parsing, Richard Adams
Re: RE: [Pubmednew] Problem with esearch.fcgi, Heikki Lehvaslaiho
Re: seqIO, Josh Lauricha
RE: seqIO, Desmond Lim
Re: seqIO, Hilmar Lapp
seqIO, Desmond Lim
seqIO, Desmond Lim
RE: [Pubmednew] Problem with esearch.fcgi, Holland, Richard

October 06, 2003

Re: GD installation problems for Solaris 9, Lincoln Stein
protein localiz. & signal peptide, Vesko Baev
bp 1.2.3 ppm install fails, Scott Cain
Re: How can i get lines without tag, next to organism, Heikki Lehvaslaiho
Re: How can i get lines without tag, next to organism, Jason Stajich
How can i get lines without tag, next to organism, Fabiola Sánchez
GD installation problems for Solaris 9, Stephen DiFazio
Bio::DB::Query::GenBank - how to specify Keyword, ypeng
Re: Bio::Biblio, Martin Senger
Re: Bio::Graphics sort_order, Lincoln Stein
RE: OS X bioperl, staden/read, install problems, Jason Stajich
RE: OS X bioperl, staden/read, install problems, Jim Nolan
Bio::Biblio, Charles Plessy
Re: problems running Bio::Graphics, Lincoln Stein
Re: [apollo] Guidance for a newbie, Lincoln Stein
Bio::Graphics sort_order, Richard Adams
problems running Bio::Graphics, Eileen goh

October 05, 2003

Re: [apollo] Guidance for a newbie, Lincoln Stein
Re: Bio::Graphics output, Niels Larsen
Stealing CA $9 billions = Recall Election, ENRON = Swarzenegger
Stealing CA $9 billions = Recall Election, ENRON = Swarzenegger

October 04, 2003

Re: GD problem, Lincoln Stein
RE: OS X bioperl, staden/read, install problems, Jim Nolan
Re: Bio::Graphics segments problem, Lincoln Stein
Re: Bio::Root::IO possible bug?, Vamsi
RE: OS X bioperl, staden/read, install problems, Jason Stajich
Available; Government and private financing in Canada, C B R C
Re: Bio::Root::IO possible bug?, Jason Stajich
Re: OS X bioperl, staden/read, install problems (fwd), Jason Stajich
(no subject), 010381P GOH PHUAY CHENG
Bio::Root::IO possible bug?, Vamsi

October 03, 2003

RE: OS X bioperl, staden/read, install problems, Jim Nolan
RE: OS X bioperl, staden/read, install problems, Brian Osborne
Re: OS X bioperl, staden/read, install problems, Jason Stajich
OS X bioperl, staden/read, install problems, Jim Nolan
Re: Bio::Graphics output, Lincoln Stein
Re: Remote Blast, Sandro da Silva Camargo
Re: something wrong with my code?, Jason Stajich
something wrong with my code?, Ambrose Ng

October 02, 2003

Bioperl PPM for 1.2.3, Brian Osborne
RE: Installation Problems, Brian Madsen
Re: help (fwd), Stefan Kirov
Re: Remote Blast, Ewan Birney
Re: Remote Blast, Ewan Birney
Remote Blast, Sandro da Silva Camargo
help (fwd), Jason Stajich
Re: RE: problem connecting to remote blast, Stefan Kirov
Re: RE: problem connecting to remote blast, Jason Stajich
Can't locate loadable object for module GD, Eileen goh
problem with remote blast, 010381P GOH PHUAY CHENG
RE: problem connecting to remote blast, 010381P GOH PHUAY CHENG
Re: Installation Problems, Heikki Lehvaslaiho

October 01, 2003

Re: Bio::Tools::GFF GFF3 parsing, Chris Mungall
Installation Problems, Brian Madsen
Bioperl Developer snapshot 1.3.01, Heikki Lehvaslaiho
palindrome, Jason Stajich
Re: proposed changes to RangeI.pm, Chris Mungall

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