lang.perl.bio.general (thread)

bioinformatics(BioPerl)/cell biology, Vesko Baev
Windows support?, Brian Osborne
RE: how to pass --noplot option to Bio::Tools::Run::Tmhmm ?, Marc Logghe
how to pass --noplot option to Bio::Tools::Run::Tmhmm ?, Marc Logghe
- Re: how to pass --noplot option to Bio::Tools::Run::Tmhmm ?, Jason Stajich
parsing blast reports, Martin A. Hansen
- RE: parsing blast reports, Brian Osborne
- Re: parsing blast reports, Jason Stajich
blastq3 and remove_rid problem, 1 .. 22...333
modules for loading HSP data into chado:f eature, featureloc,feature_relationship, Charles Hauser
Bio::Graphics segments problem, Vamsi
script installation, Cook, Malcolm
- RE: [NORDNS] [65.246.187.176] script installation, Brian Osborne
Quo Vadis USA, Bush Bible PNAC
- Quo Vadis USA, Bush Bible PNAC
Electrical Design, Resume for job
- Electrical Design, Resume for job
matching miRNAs to one or a lot of mRNAs, Starr Hazard
- RE: [NORDNS] matching miRNAs to one or a lot of mRNAs, Brian Osborne
- Re: matching miRNAs to one or a lot of mRNAs, Ian Korf
  - Re: matching miRNAs to one or a lot of mRNAs, Peter Stoilov
    - Re: matching miRNAs to one or a lot of mRNAs, Ian Korf
    - Re: matching miRNAs to one or a lot of mRNAs, Stefan Kirov
Entrez interface for NT contigs, Neill White
BioPerl 1.2.3, Douglas Joubert
SOAP::Lite and bioperl, Al Park
- RE: SOAP::Lite and bioperl, Al Park
Query re installing Bundle::BioPerl packages in a personal directory, Peter Schattner
- Re: Query re installing Bundle::BioPerl packages in a personal directory, Jason Stajich
  - RE: [NORDNS] Re: Query re installing Bundle::BioPerl packages in a personal directory, Brian Osborne
Re: [Bug 1526] New: Where in the world is pg.pm?, Lincoln Stein
Bio::Seq documentation?, Wes Barris
- RE: [NORDNS] Bio::Seq documentation?, Brian Osborne
- RE: Bio::Seq documentation?, Marc Logghe
Bio::DB::GenBank under mod-perl, Mark Wilkinson
End-User Development Survey, Catherine Letondal
Pise modules: testing for service availability, Catherine Letondal
Exonerate vulgar lines; SearchIO model, Ewan Birney
- Re: Exonerate vulgar lines; SearchIO model, Jason Stajich
  - Re: Re: Exonerate vulgar lines; SearchIO model, Ewan Birney
slides of persistent bioperl bosc03 talk, Hilmar Lapp
Re: [BioSQL-l] gene ontology questions revisited, Hilmar Lapp
Trees as graphics, basm101
- Re: Trees as graphics, Jason Stajich
  - Re: Trees as graphics, Allen Day
- Re: Trees as graphics, Donald G. Jackson
  - Re: Trees as graphics, basm101
    - Re: Re: Trees as graphics, Jason Stajich
Version 1.2.3 class diagram?, Brian Osborne
- Re: Version 1.2.3 class diagram?, Jason Stajich
Bio::TreeIO::tabtree Question, Simon Chan
- Drawing ASCII trees (was Bio::TreeIO::tabtree Question), Jason Stajich
GD problem, Vesko Baev
- RE: GD problem, Marc Logghe
R E S U M E, ELECTRICIAN
- R E S U M E, ELECTRICIAN
- R e s u m e, E N G I N E E R
- R e s u m e, E N G I N E E R
Bio::Tools::GFF GFF3 parsing, Jason Stajich
- Re: Bio::Tools::GFF GFF3 parsing, Lincoln Stein
  - Re: Bio::Tools::GFF GFF3 parsing, Jason Stajich
interfaces, Richard Adams
- Re: interfaces, Jason Stajich
[Bioperl-announce-l] Release Announcement: Bioperl 1.2.3, Jason Stajich
- Is Bioperl 1.2.3 in CPAN?, Bernhard Schmalhofer
  - RE: [NORDNS] Is Bioperl 1.2.3 in CPAN?, Brian Osborne
Release Announcement: Bioperl 1.2.3, Jason Stajich
- Release Announcement: bioperl-microarray 0.1, Allen Day
Circular References, Chet Langin
Re: [Bioperl-guts-l] How can i get Data from GenBank file, Jason Stajich
blat module, Jack Chen
- Re: blat module, Jason Stajich
  - Re: blat module, Jack Chen
bioperl mirror at iubio.bio.indiana.edu now daily updated, Don Gilbert
Finding modules on hard disk, Chet Langin
- Re: Finding modules on hard disk, Shawn Hoon
- RE: Finding modules on hard disk, Marc Logghe
proposed changes to RangeI.pm, Chris Mungall
- Re: proposed changes to RangeI.pm, Hilmar Lapp
  - Re: proposed changes to RangeI.pm, Heikki Lehvaslaiho
order of sublocations, Marc Logghe
- Re: order of sublocations, Jason Stajich
- RE: order of sublocations, Marc Logghe
Would like to use bioperl and techniques for analysis DNA sequences., deltoro
- Re: Would like to use bioperl and techniques for analysis DNA sequences., Jason Stajich
bioperl 1.2.3 RC1, Jason Stajich
- Re: [Bioperl-announce-l] bioperl 1.2.3 RC1, Steve Chervitz
  - Re: [Bioperl-announce-l] bioperl 1.2.3 RC1, Jason Stajich
- Re: bioperl 1.2.3 RC1, Koen van der Drift
  - RE: [NORDNS] Re: bioperl 1.2.3 RC1, Brian Osborne
SeqIO::GeneConstructionKit ??, Cook, Malcolm
- SeqIO::GeneConstructionKit ??, Cook, Malcolm
  - Re: SeqIO::GeneConstructionKit ??, Jason Stajich
- RE: SeqIO::GeneConstructionKit ??, Cook, Malcolm
  - Re: SeqIO::GeneConstructionKit ??, Dave Howorth
RE: [NORDNS] SOAP and bioperl, Al Park
SOAP and bioperl, Al Park
- RE: [NORDNS] SOAP and bioperl, Brian Osborne
- Re: SOAP and bioperl, Martin Senger
- RE: Re: SOAP and bioperl, Al Park
RE: [NORDNS] [Bioperl-guts-l] [Bug 1508] SeqIO allows fasta to masquerade as genbank or gcg or ace, Brian Osborne
About the bioperl on Tigr_XML access problem, Haidan Guo
search in genomatix, Petra Birth
modul to search in genomatix, Petra Birth
search/parse in genomatix, Petra Birth
Bio::Graphics output to file!, Vesko Baev
- Re: Bio::Graphics output to file!, Jonathan Epstein
- Re: Bio::Graphics output to file!, Lincoln Stein
Bio::Graphics output, Vesko Baev
- Re: Bio::Graphics output, Lincoln Stein
- RE: Bio::Graphics output, Marc Logghe
  - Re: Bio::Graphics output, Niels Larsen
puzzling questions:genbank file changed?, Jiang Holly
Bio::DB::GFF & Bio::Graphics updates in branch-1-2, Lincoln Stein
Resume from Mechanical, Civil & Structural Designer, CAD Engineer
- Resume from Mechanical, Civil & Structural Designer, CAD Engineer
How do you pull features out of a genbank file, Wes Barris
- How do you pull features out of a genbank file, Richard Adams
blast overview script, Jason Stajich
Bio::DB::GenBank problem, Magic Fang
- Parsing tfasta reports, January Weiner 3
  - Re: Parsing tfasta reports, Jason Stajich
- Re: Bio::DB::GenBank problem, Lincoln Stein
draw vertical line and text string in Bio::Graphics::Panel object, Magic Fang
- Re: draw vertical line and text string in Bio::Graphics::Panel object, Lincoln Stein
Small change in UniGene file format, Andrew Macgregor
- Re: Small change in UniGene file format, Hilmar Lapp
  - Re: Small change in UniGene file format, Jason Stajich
    - Re: Small change in UniGene file format, Andrew Macgregor
Questions: CoreLib [001.000] 1>: Failed to allocate 10000 bytes, Jiang Holly
sources code help,
- RE: sources code help, Brian Osborne
genbank file parsing,
- genbank file parsing, Jiang Holly
  - Re: genbank file parsing, Wes Barris
questions: [NULL_Caption] FATAL ERROR: CoreLib [001.000] 1>: Failed to allocate 10000 byte,
Question about genbank.pm/SeqIO support for info in SEGMENT Genbank line, Susan Cassidy
phd format conversion., sankari thirumal
- RE: phd format conversion., Brian Osborne
- RE: phd format conversion., Brian Osborne
- RE: phd format conversion., James D. White
foreach (@array)?, Vesko Baev
- Re: foreach (@array)?, Josh Lauricha
- Re: foreach (@array)?, Stephan Bour
- Re: foreach (@array)?, Jonathan M. Manning
- Re: foreach (@array)?, Stefan Kirov
(no subject), Ewan Birney
- Re: primer selection, Jonathan M. Manning
StandAloneBlast for Wu-Blast, Shawn Hoon
genbank parsing,
source codes required,
Re: problem with Graphics, Lincoln Stein
Re: No version numbers on bioperl pms., Lincoln Stein
Re: multiple inheritance, Lincoln Stein
- Re: multiple inheritance, Lincoln Stein
Re: load_gff.pl question, Lincoln Stein
Re: GFF to gene structure pictures, Lincoln Stein
Re: Bio::Graphics, Lincoln Stein
Re: Bio::DB::GFF problem, Lincoln Stein
- Re: Bio::DB::GFF problem, Matthias Wahl
  - Re: Bio::DB::GFF problem, Lincoln Stein
Re: Bemusement with get_seq_by_gi in a CGI script, Lincoln Stein
- Re: [BioPerl] Re: Bemusement with get_seq_by_gi in a CGI script, Mark Wilkinson
  - Re: [BioPerl] Re: Bemusement with get_seq_by_gi in a CGI script, Jason Stajich
  - Re: [BioPerl] Re: Bemusement with get_seq_by_gi in a CGI script, Jason Stajich
Warning and error message using Bio::Biblio module, Siddhartha Basu
- Re: Warning and error message using Bio::Biblio module, Heikki Lehvaslaiho
  - Message not available
    - Re: Warning and error message using Bio::Biblio module, Heikki Lehvaslaiho
- Re: Warning and error message using Bio::Biblio module, Martin Senger
1.2.3 release prep, modules needing maintainers, Jason Stajich
- Re: 1.2.3 release prep, modules needing maintainers, Lincoln Stein
Help with Bio::DB::Query::GenBank, michael watson (IAH-C)
- Re: Help with Bio::DB::Query::GenBank, Lincoln Stein
- RE: Help with Bio::DB::Query::GenBank, michael watson (IAH-C)
[Fwd: Re: About Bio::DB::GenBank!], yaofx
- RE: [Fwd: Re: About Bio::DB::GenBank!], wxu
Bio::DB::GenBank problem?, wxu
- Re: Bio::DB::GenBank problem?, James Wasmuth
  - RE: Bio::DB::GenBank problem?, wxu
Bio::SimpleAlign problems, Peter Stogios
- Re: Bio::SimpleAlign problems, Jason Stajich
- RE: Bio::SimpleAlign problems, Brian Osborne
- RE: Bio::SimpleAlign problems, Brian Osborne
Connecting Bio::DB::GFF::Features on a Bio::Graphics::Panel, Philip MacMenamin
- Connecting Bio::DB::GFF::Features on a Bio::Graphics::Panel, Philip MacMenamin
  - Re: Connecting Bio::DB::GFF::Features on a Bio::Graphics::Panel, Lincoln Stein
Undelivered mail: Your details, DrWeb-DAEMON
clustalw alignment display format, Jack Chen
- Re: clustalw alignment display format, Shawn Hoon
Problems with biosql, Christopher Mason
- Re: Problems with biosql, Hilmar Lapp
Bio::DB::GFF feature request granted, lstein
BioPerl problem - can anyone help me?, Vesko Baev
TCoffee message, vesi_radeva
TCoffee question?, Vesko Baev
- Re: TCoffee question?, Shawn Hoon
can't start 'water', Vesko Baev
- Re: can't start 'water', Jason Stajich
- Re: can't start 'water', Catherine Letondal
Fwd: Help, Aaron J. Mackey
- Re: Fwd: Help, Lincoln Stein
Bio::SeqIO, Lobvi Matamoros
RE: [Bioperl-guts-l] [Bug 1509] Two tutorial problems: missing datafile and incorrect example, Brian Osborne
cloning and Storable, Will Spooner
- Re: cloning and Storable, Ewan Birney
- Re: cloning and Storable, Heikki Lehvaslaiho
  - Re: cloning and Storable, Will Spooner
    - Re: Re: cloning and Storable, Heikki Lehvaslaiho
    - Re: Re: cloning and Storable, Will Spooner
    - Re: Re: cloning and Storable, Heikki Lehvaslaiho
    - Re: Re: cloning and Storable, Ewan Birney
    - Re: Re: cloning and Storable, Heikki Lehvaslaiho
SeqFactory diff, Michal Kurowski
- Re: SeqFactory diff, Hilmar Lapp
  - Re: SeqFactory diff, Michal Kurowski
- RE: Re: SeqFactory diff, Hilmar Lapp
  - Re: SeqFactory diff, Michal Kurowski
2seq compare?, Vesko Baev
- Re: 2seq compare?, Heikki Lehvaslaiho
Blastx parser misses scores, Holland, Richard
- Re: Blastx parser misses scores, Jason Stajich
- RE: Blastx parser misses scores, Holland, Richard
  - RE: Blastx parser misses scores, Jason Stajich
Running Blast and Hiding Error Message, James Wasmuth
script for Win32, Lobvi Matamoros
Bio::SearchIO::sim4 parser, Luc.Gauthier
script, Lobvi Matamoros
- Re: script, Ewan Birney
- Re: script, James Wasmuth
  - Re: script, Andreas Kahari
    - Re: script, James Wasmuth
- RE: script, Brian Osborne
- Script, Lobvi Matamoros
  - Re: Script, Jason Stajich
  - RE: [NORDNS] Script, Brian Osborne
  - Re: Script, Andrew Walsh
retrieving seq from miltifasta files, Vesko Baev
未承諾広告＊１億円を・・５千万円保証を・・探す方法とは・・, ３億円を５億９千万円証拠有証拠で探す！
comparing two seq, Vesko Baev
- Re: comparing two seq, Heikki Lehvaslaiho
- Re: comparing two seq, Heikki Lehvaslaiho
- Re: comparing two seq, Heikki Lehvaslaiho
- RE: comparing two seq, Marc Logghe
Our next seminars dates, Robert Seviour
remote blast fix, Jason Stajich
SeqIO: Validate File-Format, Johnny Amos
- RE: SeqIO: Validate File-Format, Brian Osborne
- Re: SeqIO: Validate File-Format, Jason Stajich
- Re: SeqIO: Validate File-Format, Johnny Amos
ask for help about the new RID format on NCBI server, Guojun Yang
BioPerl host space?, Vesko Baev
- Re: BioPerl host space?, Heikki Lehvaslaiho
E-value of a combined alignment?, Yee Man Chan
- Re: E-value of a combined alignment?, Ian Korf
- Re: E-value of a combined alignment?, Richard Harrington
- Re: E-value of a combined alignment?, Chris Dwan (CCGB)
  - Re: E-value of a combined alignment?, Ian Korf
help- remote blast, Vesko Baev
- RE: help- remote blast, Wenwu Cui
Desperately seeking object model for drug screening experiments in mouse models, Nathan \(Nat\) Goodman
Sir Laugh-a-lot sdyfp, vssInflict Hilarious Pranks
codon useage modules, Richard Adams
- RemoteBlast user: NCBI changer RID extension, Wenwu Cui
- Re: codon useage modules, Heikki Lehvaslaiho
  - Re: codon useage modules, Richard Adams
- codon useage modules, Richard Adams
  - Re: codon useage modules, Heikki Lehvaslaiho
- codon useage modules, Richard Adams
  - Re: codon useage modules, Heikki Lehvaslaiho
Should we tr y anyways?, Cynthia Pratt
Re: Bio::Graphics::Panel, -spacing => 0 constructor problem., Lincoln Stein
- Re: Bio::Graphics::Panel, -spacing => 0 constructor problem., Philip MacMenamin
  - Re: Bio::Graphics::Panel, -spacing => 0 constructor problem., Lincoln Stein
GeneDB Question, Markus Kador
- Re: GeneDB Question, Keith James
  - Re: GeneDB Question, Heikki Lehvaslaiho
planning for bioperl 1.4, Heikki Lehvaslaiho
- planning for bioperl 1.4, Richard Adams
  - Re: planning for bioperl 1.4, Ewan Birney
  - Re: planning for bioperl 1.4, Heikki Lehvaslaiho
Re: doing a 1.2.3 release, Heikki Lehvaslaiho
Re: bugs on branch; tests on main trunk, Heikki Lehvaslaiho
- cloning and Storable Re: bugs on branch; tests on main trunk, Heikki Lehvaslaiho
  - Re: cloning and Storable Re: bugs on branch; tests on main trunk, Ewan Birney
    - Re: cloning and Storable Re: bugs on branch; tests on main trunk, Hilmar Lapp
    - Re: cloning and Storable Re: bugs on branch; tests on main trunk, Lincoln Stein
    - Re: cloning and Storable Re: bugs on branch; tests on main trunk, lehvasla
Re: How Energy Storage can help us ?, Flywheel
- Re: How Energy Storage can help us ?, Flywheel
Re: ace to msf format?, Jason Stajich
- Re: ace to msf format?, Wes Barris
  - Re: ace to msf format?, Robson Francisco de Souza
    - Re: ace to msf format?, Jason Stajich
    - Re: ace to msf format?, Wes Barris