lang.perl.bio.general (date)

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lang.perl.bio.general (date)

September 30, 2003

bioinformatics(BioPerl)/cell biology, Vesko Baev
Windows support?, Brian Osborne
RE: how to pass --noplot option to Bio::Tools::Run::Tmhmm ?, Marc Logghe
Re: how to pass --noplot option to Bio::Tools::Run::Tmhmm ?, Jason Stajich
how to pass --noplot option to Bio::Tools::Run::Tmhmm ?, Marc Logghe
Re: parsing blast reports, Jason Stajich
RE: parsing blast reports, Brian Osborne
parsing blast reports, Martin A. Hansen

September 29, 2003

blastq3 and remove_rid problem, 1 .. 22...333
modules for loading HSP data into chado:f eature, featureloc,feature_relationship, Charles Hauser
Bio::Graphics segments problem, Vamsi
RE: [NORDNS] [65.246.187.176] script installation, Brian Osborne
script installation, Cook, Malcolm

September 28, 2003

Re: matching miRNAs to one or a lot of mRNAs, Stefan Kirov
Quo Vadis USA, Bush Bible PNAC
Quo Vadis USA, Bush Bible PNAC
Re: matching miRNAs to one or a lot of mRNAs, Ian Korf

September 27, 2003

Re: matching miRNAs to one or a lot of mRNAs, Peter Stoilov
Re: matching miRNAs to one or a lot of mRNAs, Ian Korf
Electrical Design, Resume for job
Electrical Design, Resume for job

September 26, 2003

RE: [NORDNS] matching miRNAs to one or a lot of mRNAs, Brian Osborne
matching miRNAs to one or a lot of mRNAs, Starr Hazard
Re: Bio::Tools::GFF GFF3 parsing, Jason Stajich
Re: Bio::Tools::GFF GFF3 parsing, Lincoln Stein
RE: [NORDNS] Is Bioperl 1.2.3 in CPAN?, Brian Osborne
Entrez interface for NT contigs, Neill White

September 25, 2003

BioPerl 1.2.3, Douglas Joubert
RE: SOAP::Lite and bioperl, Al Park
SOAP::Lite and bioperl, Al Park
Is Bioperl 1.2.3 in CPAN?, Bernhard Schmalhofer

September 24, 2003

RE: [NORDNS] Re: Query re installing Bundle::BioPerl packages in a personal directory, Brian Osborne
Re: Query re installing Bundle::BioPerl packages in a personal directory, Jason Stajich
Query re installing Bundle::BioPerl packages in a personal directory, Peter Schattner
Re: [Bug 1526] New: Where in the world is pg.pm?, Lincoln Stein
RE: [NORDNS] Bio::Seq documentation?, Brian Osborne
RE: Bio::Seq documentation?, Marc Logghe
Bio::Seq documentation?, Wes Barris

September 23, 2003

Re: proposed changes to RangeI.pm, Heikki Lehvaslaiho
Re: Script, Andrew Walsh
R e s u m e, E N G I N E E R
R e s u m e, E N G I N E E R

September 22, 2003

Bio::DB::GenBank under mod-perl, Mark Wilkinson
RE: [NORDNS] Script, Brian Osborne
Re: Script, Jason Stajich
Script, Lobvi Matamoros
Re: Re: Trees as graphics, Jason Stajich
Re: Trees as graphics, basm101
Re: Re: Exonerate vulgar lines; SearchIO model, Ewan Birney
End-User Development Survey, Catherine Letondal

September 21, 2003

RE: order of sublocations, Marc Logghe
Pise modules: testing for service availability, Catherine Letondal
Drawing ASCII trees (was Bio::TreeIO::tabtree Question), Jason Stajich
Re: Warning and error message using Bio::Biblio module, Martin Senger
Re: Trees as graphics, Donald G. Jackson
Re: Exonerate vulgar lines; SearchIO model, Jason Stajich
Exonerate vulgar lines; SearchIO model, Ewan Birney
slides of persistent bioperl bosc03 talk, Hilmar Lapp

September 19, 2003

Re: Problems with biosql, Hilmar Lapp
Re: proposed changes to RangeI.pm, Hilmar Lapp
Re: [BioSQL-l] gene ontology questions revisited, Hilmar Lapp
Re: Trees as graphics, Allen Day
Re: Trees as graphics, Jason Stajich
Trees as graphics, basm101
Re: Version 1.2.3 class diagram?, Jason Stajich
Version 1.2.3 class diagram?, Brian Osborne
RE: GD problem, Marc Logghe
Bio::TreeIO::tabtree Question, Simon Chan
GD problem, Vesko Baev
R E S U M E, ELECTRICIAN
R E S U M E, ELECTRICIAN
Release Announcement: bioperl-microarray 0.1, Allen Day

September 18, 2003

Bio::Tools::GFF GFF3 parsing, Jason Stajich
RE: [NORDNS] Re: bioperl 1.2.3 RC1, Brian Osborne
Re: bioperl 1.2.3 RC1, Koen van der Drift
Re: interfaces, Jason Stajich
interfaces, Richard Adams
[Bioperl-announce-l] Release Announcement: Bioperl 1.2.3, Jason Stajich
Release Announcement: Bioperl 1.2.3, Jason Stajich
Circular References, Chet Langin

September 17, 2003

Re: blat module, Jack Chen
Re: blat module, Jason Stajich
Re: [Bioperl-guts-l] How can i get Data from GenBank file, Jason Stajich
blat module, Jack Chen
Re: Bio::Graphics output to file!, Lincoln Stein
Re: Bio::Graphics output, Lincoln Stein
bioperl mirror at iubio.bio.indiana.edu now daily updated, Don Gilbert
Re: SeqIO::GeneConstructionKit ??, Dave Howorth
RE: phd format conversion., James D. White
Re: Finding modules on hard disk, Shawn Hoon
RE: Finding modules on hard disk, Marc Logghe
Finding modules on hard disk, Chet Langin
proposed changes to RangeI.pm, Chris Mungall
Re: [Bioperl-announce-l] bioperl 1.2.3 RC1, Jason Stajich
RE: Re: SOAP and bioperl, Al Park
Re: order of sublocations, Jason Stajich
Re: SOAP and bioperl, Martin Senger
order of sublocations, Marc Logghe
Re: [Bioperl-announce-l] bioperl 1.2.3 RC1, Steve Chervitz
Re: Small change in UniGene file format, Andrew Macgregor
Re: Small change in UniGene file format, Jason Stajich

September 16, 2003

Re: Small change in UniGene file format, Hilmar Lapp
RE: SeqIO::GeneConstructionKit ??, Cook, Malcolm
Re: SeqIO::GeneConstructionKit ??, Jason Stajich

September 15, 2003

Re: Would like to use bioperl and techniques for analysis DNA sequences., Jason Stajich
Would like to use bioperl and techniques for analysis DNA sequences., deltoro
bioperl 1.2.3 RC1, Jason Stajich
SeqIO::GeneConstructionKit ??, Cook, Malcolm
SeqIO::GeneConstructionKit ??, Cook, Malcolm
RE: [NORDNS] SOAP and bioperl, Al Park
RE: [NORDNS] SOAP and bioperl, Brian Osborne
SOAP and bioperl, Al Park
RE: [NORDNS] [Bioperl-guts-l] [Bug 1508] SeqIO allows fasta to masquerade as genbank or gcg or ace, Brian Osborne

September 14, 2003

About the bioperl on Tigr_XML access problem, Haidan Guo
Re: cloning and Storable Re: bugs on branch; tests on main trunk, lehvasla

September 12, 2003

RE: phd format conversion., Brian Osborne
search in genomatix, Petra Birth
modul to search in genomatix, Petra Birth
search/parse in genomatix, Petra Birth
Re: Bio::Graphics output to file!, Jonathan Epstein
Bio::Graphics output to file!, Vesko Baev
Re: Bio::Graphics output, Niels Larsen
RE: Bio::Graphics output, Marc Logghe
Bio::Graphics output, Vesko Baev
puzzling questions:genbank file changed?, Jiang Holly
Re: cloning and Storable Re: bugs on branch; tests on main trunk, Lincoln Stein
Re: [BioPerl] Re: Bemusement with get_seq_by_gi in a CGI script, Jason Stajich
Re: [BioPerl] Re: Bemusement with get_seq_by_gi in a CGI script, Jason Stajich
Re: [BioPerl] Re: Bemusement with get_seq_by_gi in a CGI script, Mark Wilkinson
Bio::DB::GFF & Bio::Graphics updates in branch-1-2, Lincoln Stein
Re: Bio::DB::GFF problem, Lincoln Stein
Resume from Mechanical, Civil & Structural Designer, CAD Engineer
Resume from Mechanical, Civil & Structural Designer, CAD Engineer
How do you pull features out of a genbank file, Richard Adams
How do you pull features out of a genbank file, Wes Barris
blast overview script, Jason Stajich
Re: draw vertical line and text string in Bio::Graphics::Panel object, Lincoln Stein
Re: Bio::DB::GenBank problem, Lincoln Stein

September 11, 2003

RE: phd format conversion., Brian Osborne
RE: sources code help, Brian Osborne
Re: Parsing tfasta reports, Jason Stajich
Parsing tfasta reports, January Weiner 3
Bio::DB::GenBank problem, Magic Fang
draw vertical line and text string in Bio::Graphics::Panel object, Magic Fang
Small change in UniGene file format, Andrew Macgregor
Re: genbank file parsing, Wes Barris
genbank file parsing, Jiang Holly
Questions: CoreLib [001.000] 1>: Failed to allocate 10000 bytes, Jiang Holly
sources code help,
genbank file parsing,
questions: [NULL_Caption] FATAL ERROR: CoreLib [001.000] 1>: Failed to allocate 10000 byte,

September 10, 2003

Question about genbank.pm/SeqIO support for info in SEGMENT Genbank line, Susan Cassidy
phd format conversion., sankari thirumal
Re: foreach (@array)?, Stefan Kirov
Re: foreach (@array)?, Jonathan M. Manning
Re: foreach (@array)?, Stephan Bour
Re: foreach (@array)?, Josh Lauricha
foreach (@array)?, Vesko Baev
Re: primer selection, Jonathan M. Manning
(no subject), Ewan Birney
Re: Bio::DB::GFF problem, Matthias Wahl
StandAloneBlast for Wu-Blast, Shawn Hoon
genbank parsing,
source codes required,

September 09, 2003

Re: problem with Graphics, Lincoln Stein
Re: No version numbers on bioperl pms., Lincoln Stein
Re: multiple inheritance, Lincoln Stein
Re: multiple inheritance, Lincoln Stein
Re: load_gff.pl question, Lincoln Stein
Re: Help with Bio::DB::Query::GenBank, Lincoln Stein
Re: Warning and error message using Bio::Biblio module, Heikki Lehvaslaiho
Re: GFF to gene structure pictures, Lincoln Stein
Re: Warning and error message using Bio::Biblio module, Heikki Lehvaslaiho
Re: Connecting Bio::DB::GFF::Features on a Bio::Graphics::Panel, Lincoln Stein
RE: [Fwd: Re: About Bio::DB::GenBank!], wxu
Re: Bio::Graphics, Lincoln Stein
Re: Bio::Graphics::Panel, -spacing => 0 constructor problem., Lincoln Stein
Re: Bio::DB::GFF problem, Lincoln Stein
Re: Bemusement with get_seq_by_gi in a CGI script, Lincoln Stein
Re: 1.2.3 release prep, modules needing maintainers, Lincoln Stein
Warning and error message using Bio::Biblio module, Siddhartha Basu
RE: Help with Bio::DB::Query::GenBank, michael watson (IAH-C)
RE: Bio::DB::GenBank problem?, wxu
1.2.3 release prep, modules needing maintainers, Jason Stajich
RE: Bio::SimpleAlign problems, Brian Osborne
Help with Bio::DB::Query::GenBank, michael watson (IAH-C)
[Fwd: Re: About Bio::DB::GenBank!], yaofx
RE: Bio::SimpleAlign problems, Brian Osborne
Re: Bio::DB::GenBank problem?, James Wasmuth

September 08, 2003

Bio::DB::GenBank problem?, wxu
Re: Bio::SimpleAlign problems, Jason Stajich
Bio::SimpleAlign problems, Peter Stogios
Connecting Bio::DB::GFF::Features on a Bio::Graphics::Panel, Philip MacMenamin
Connecting Bio::DB::GFF::Features on a Bio::Graphics::Panel, Philip MacMenamin
Re: codon useage modules, Heikki Lehvaslaiho
codon useage modules, Richard Adams
Re: clustalw alignment display format, Shawn Hoon
Undelivered mail: Your details, DrWeb-DAEMON
clustalw alignment display format, Jack Chen

September 07, 2003

Problems with biosql, Christopher Mason
Re: can't start 'water', Catherine Letondal
Bio::DB::GFF feature request granted, lstein
BioPerl problem - can anyone help me?, Vesko Baev
TCoffee message, vesi_radeva

September 06, 2003

Re: TCoffee question?, Shawn Hoon
TCoffee question?, Vesko Baev
Re: SeqFactory diff, Michal Kurowski
Re: can't start 'water', Jason Stajich
can't start 'water', Vesko Baev
Re: Re: cloning and Storable, Heikki Lehvaslaiho
Re: Re: cloning and Storable, Ewan Birney

September 05, 2003

Re: Fwd: Help, Lincoln Stein
Fwd: Help, Aaron J. Mackey
RE: Re: SeqFactory diff, Hilmar Lapp
Re: Re: cloning and Storable, Heikki Lehvaslaiho
Bio::SeqIO, Lobvi Matamoros
Re: Re: cloning and Storable, Will Spooner
Re: Re: cloning and Storable, Heikki Lehvaslaiho
Re: SeqFactory diff, Michal Kurowski
Re: SeqFactory diff, Hilmar Lapp
RE: [Bioperl-guts-l] [Bug 1509] Two tutorial problems: missing datafile and incorrect example, Brian Osborne
Re: cloning and Storable, Will Spooner
cloning and Storable, Will Spooner
SeqFactory diff, Michal Kurowski
Re: 2seq compare?, Heikki Lehvaslaiho
Re: cloning and Storable, Heikki Lehvaslaiho
2seq compare?, Vesko Baev
Re: cloning and Storable, Ewan Birney
RE: Blastx parser misses scores, Jason Stajich

September 04, 2003

RE: Blastx parser misses scores, Holland, Richard
Re: Blastx parser misses scores, Jason Stajich
Blastx parser misses scores, Holland, Richard
Running Blast and Hiding Error Message, James Wasmuth
script for Win32, Lobvi Matamoros
RE: script, Brian Osborne
Re: script, James Wasmuth
Re: script, Andreas Kahari
Bio::SearchIO::sim4 parser, Luc.Gauthier
Re: script, James Wasmuth
Re: script, Ewan Birney
script, Lobvi Matamoros
retrieving seq from miltifasta files, Vesko Baev
未承諾広告＊１億円を・・５千万円保証を・・探す方法とは・・, ３億円を５億９千万円証拠有証拠で探す！
RE: comparing two seq, Marc Logghe
Re: comparing two seq, Heikki Lehvaslaiho
Re: comparing two seq, Heikki Lehvaslaiho
Re: comparing two seq, Heikki Lehvaslaiho
Re: codon useage modules, Heikki Lehvaslaiho
codon useage modules, Richard Adams
comparing two seq, Vesko Baev
Re: cloning and Storable Re: bugs on branch; tests on main trunk, Hilmar Lapp
Re: cloning and Storable Re: bugs on branch; tests on main trunk, Ewan Birney
Re: codon useage modules, Richard Adams
Our next seminars dates, Robert Seviour

September 03, 2003

Re: SeqIO: Validate File-Format, Johnny Amos
cloning and Storable Re: bugs on branch; tests on main trunk, Heikki Lehvaslaiho
remote blast fix, Jason Stajich
Re: SeqIO: Validate File-Format, Jason Stajich
RE: SeqIO: Validate File-Format, Brian Osborne
Re: E-value of a combined alignment?, Ian Korf
SeqIO: Validate File-Format, Johnny Amos
Re: E-value of a combined alignment?, Chris Dwan (CCGB)
Re: E-value of a combined alignment?, Richard Harrington
ask for help about the new RID format on NCBI server, Guojun Yang
Re: E-value of a combined alignment?, Ian Korf
Re: BioPerl host space?, Heikki Lehvaslaiho
BioPerl host space?, Vesko Baev
Re: ace to msf format?, Wes Barris
E-value of a combined alignment?, Yee Man Chan

September 02, 2003

Re: Bio::Graphics::Panel, -spacing => 0 constructor problem., Philip MacMenamin
Re: codon useage modules, Heikki Lehvaslaiho
RE: help- remote blast, Wenwu Cui
help- remote blast, Vesko Baev
Re: ace to msf format?, Jason Stajich
Desperately seeking object model for drug screening experiments in mouse models, Nathan \(Nat\) Goodman
Re: ace to msf format?, Robson Francisco de Souza
RemoteBlast user: NCBI changer RID extension, Wenwu Cui
Sir Laugh-a-lot sdyfp, vssInflict Hilarious Pranks
codon useage modules, Richard Adams
Should we tr y anyways?, Cynthia Pratt
Re: planning for bioperl 1.4, Heikki Lehvaslaiho
Re: GeneDB Question, Heikki Lehvaslaiho
Re: planning for bioperl 1.4, Ewan Birney
planning for bioperl 1.4, Richard Adams

September 01, 2003

Re: Bio::Graphics::Panel, -spacing => 0 constructor problem., Lincoln Stein
Re: GeneDB Question, Keith James
GeneDB Question, Markus Kador
planning for bioperl 1.4, Heikki Lehvaslaiho
Re: doing a 1.2.3 release, Heikki Lehvaslaiho
Re: bugs on branch; tests on main trunk, Heikki Lehvaslaiho
Re: How Energy Storage can help us ?, Flywheel
Re: How Energy Storage can help us ?, Flywheel
Re: ace to msf format?, Wes Barris
Re: ace to msf format?, Jason Stajich

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