lang.perl.bio.general (thread)

Engineer, Resume
- Engineer, Resume
Re: Problem with load_seqdatabase -> Redhat9 problem, avilella
bugs on branch; tests on main trunk, Ewan Birney
ace to msf format?, Wes Barris
- RE: ace to msf format?, Brian Osborne
  - Re: ace to msf format?, Wes Barris
aligning sequences with Bio::Tools::pSW, Joshua Bronson
- Re: aligning sequences with Bio::Tools::pSW, Shawn Hoon
- Re: aligning sequences with Bio::Tools::pSW, Aaron J Mackey
- RE: aligning sequences with Bio::Tools::pSW, Brian Osborne
- Re: aligning sequences with Bio::Tools::pSW, william.j.burtle
  - RE: aligning sequences with Bio::Tools::pSW, Brian Osborne
    - RE: aligning sequences with Bio::Tools::pSW, Jason Stajich
    - RE: aligning sequences with Bio::Tools::pSW, Brian Osborne
    - EMBOSS Alignment program [was aligning sequences with Bio::Tools::pSW], Jason Stajich
    - RE: EMBOSS Alignment program [was aligning sequences withBio::Tools::pSW], Brian Osborne
- RE: aligning sequences with Bio::Tools::pSW, william.j.burtle
  - RE: aligning sequences with Bio::Tools::pSW, Brian Osborne
Re: Smith-Waterman question, Yee Man Chan
bp_extract_feature_seq.pl : --feature CDS error, Charles Hauser
- Re: bp_extract_feature_seq.pl : --feature CDS error, Jason Stajich
taxonomy and speices, Juguang Xiao
- RE: taxonomy and speices, Brian Osborne
- Re: taxonomy and speices, Jason Stajich
How do you add a consensus to AlignIO?, Wes Barris
- Re: How do you add a consensus to AlignIO?, Jason Stajich
  - Re: How do you add a consensus to AlignIO?, Wes Barris
- Re: How do you add a consensus to AlignIO?, Wes Barris
doing a 1.2.3 release, Jason Stajich
- Re: doing a 1.2.3 release, Ewan Birney
  - Re: doing a 1.2.3 release, Jason Stajich
    - Re: doing a 1.2.3 release, Ewan Birney
    - Re: doing a 1.2.3 release, Ewan Birney
    - Re: doing a 1.2.3 release, Jason Stajich
    - Re: doing a 1.2.3 release, Rob Edwards
  - Re: doing a 1.2.3 release, Lincoln Stein
    - Re: doing a 1.2.3 release, Ewan Birney
    - Re: doing a 1.2.3 release, Lincoln Stein
    - Re: doing a 1.2.3 release, Jason Stajich
extract feature seq when split between 2 GenBank accessions, Charles Hauser
- Re: extract feature seq when split between 2 GenBank accessions, Jason Stajich
  - Re: extract feature seq when split between 2 GenBank accessions, Charles Hauser
    - Re: extract feature seq when split between 2 GenBank accessions, Jason Stajich
[BioPython] Open-Bio server downtime and IP address changes scheduled for Tuesday September 2nd 2003, Chris Dagdigian
RemoteBlast failing?, Johnny Amos
- RE: RemoteBlast failing?, Wiepert, Mathieu
Blast ridline changed? RemoteBlast seems to be failing..., Wiepert, Mathieu
remote blast, Sunil Saluja
- Remote Blast, Sunil Saluja
- RE: remote blast, Wiepert, Mathieu
about gff format to feature table format, Magic Fang
- about gff format to feature table format, Magic Fang
abott gff manipunation, Magic Fang
- Re: abott gff manipunation, Jason Stajich
Fwd: [Volunteer] submitting modules, James Freeman
- Re: Fwd: [Volunteer] submitting modules, Jason Stajich
  - Re: Fwd: [Volunteer] submitting modules (PiseWorkflow.pm), Catherine Letondal
    - PiseWorkflow.pm, Catherine Letondal
blastall parser, Eileen T. Bridge
Bio::SeachIO::Fasta problem, Martin A. Hansen
- Re: Bio::SeachIO::Fasta problem, Jason Stajich
  - Re: Bio::SeachIO::Fasta problem, Aaron J Mackey
- Re: Bio::SeachIO::Fasta problem, Douglas Joubert
Energy Storage, Flywheel
- Energy Storage, Flywheel
Bio::Graphics::Panel, -spacing => 0 constructor problem., Philip MacMenamin
bioperl-db authors, Brian Osborne
automated response, Martin Hirst
synteny, Andrew Ram
- Re: synteny, Jason Stajich
- RE: synteny, simon andrews (BI)
GFF to gene structure pictures, Andrew Ram
- Re: GFF to gene structure pictures, Jason Stajich
parser for GCG flavor of FASTA ?, Martin A. Hansen
- Re: parser for GCG flavor of FASTA ?, Jason Stajich
  - Re: parser for GCG flavor of FASTA ?, Martin A. Hansen
cgi script problem, Koen van der Drift
- Re: cgi script problem [solved], Koen van der Drift
- Re: cgi script problem, Jason Stajich
RE: Bemusement with get_seq_by_gi in a CGI script, simon andrews (BI)
- Re: [BioPerl] RE: Bemusement with get_seq_by_gi in a CGI script, Mark Wilkinson
- RE: Bemusement with get_seq_by_gi in a CGI script, Jason Stajich
  - Re: [BioPerl] RE: Bemusement with get_seq_by_gi in a CGI script, Mark Wilkinson
t/DB test fails, Koen van der Drift
- Bemusement with get_seq_by_gi in a CGI script, Mark Wilkinson
blast Bio::Tools::Run::StandAloneBlast BlastFindWords returned non-zero status, Guido Dieterich
- Re: blast Bio::Tools::Run::StandAloneBlast BlastFindWords returned non-zero status, Jason Stajich
octamers search, Jimmy Fernandez
question on installation, Jiang Qian
- Message not available
  - Message not available
    - Re: question on installation, Josh Lauricha
- Re: question on installation, Jason Stajich
Please help me with Footprinter, Ben Westover
- Re: Please help me with Footprinter, Jason Stajich
Padded position in Consensus sequence, Jayaprakash Rudraraju
- Re: Padded position in Consensus sequence, Jamie Hatfield
  - Re: Padded position in Consensus sequence, Jayaprakash Rudraraju
Installing Bioperl - Dependencies problem, Anelda Boardman
- Re: Installing Bioperl - Dependencies problem, Jason Stajich
the roundup (long), Jason Stajich
- Re: the roundup (long), Steve Chervitz
epcr to gff parser., Philip MacMenamin
- Re: epcr to gff parser., Jason Stajich
Bio::DB::GFF problem, Matthias Wahl
problem with Graphics, Sean O'Brien
- Re: problem with Graphics, Wes Barris
Help w/ AlignIO and consensus_iupac, gadbermd
- Re: Help w/ AlignIO and consensus_iupac, Jason Stajich
SeqIO BEGIN block kills Gbrowse, Mark Wilkinson
- Re: SeqIO BEGIN block kills Gbrowse, Jason Stajich
  - Re: [BioPerl] Re: SeqIO BEGIN block kills Gbrowse, Mark Wilkinson
  - Re: [BioPerl] Re: SeqIO BEGIN block kills Gbrowse, Mark Wilkinson
    - Re: [BioPerl] Re: SeqIO BEGIN block kills Gbrowse, Jason Stajich
- SeqIO BEGIN block kills Gbrowse, Scott Cain
  - Re: [BioPerl] SeqIO BEGIN block kills Gbrowse, Mark Wilkinson
parsing BLAST html, Aaron J Mackey
- Re: parsing BLAST html, Jason Stajich
- Re: parsing BLAST html, Sofia
  - RE: Re: parsing BLAST html, Brian Osborne
    - RE: Re: parsing BLAST html, Aaron J Mackey
    - RE: Re: parsing BLAST html, Brian Osborne
question about SeqIO and BSML DTD, Susan Cassidy
- Re: question about SeqIO and BSML DTD, Jason Stajich
Bio::Tools::Run::RemoteBlast: RID not found, Eric Miska
- Bio::Tools::Run::RemoteBlast: RID not found, Sergey V. Orlov
- RE: Bio::Tools::Run::RemoteBlast: RID not found, Wiepert, Mathieu
Parsing html blast output?, Wes Barris
- Re: Parsing html blast output?, Edith Schlagenhauf
- Re: Parsing html blast output?, Jason Stajich
Re: Bio::FPC, Yee Man Chan
- Re: Re: Bio::FPC, Jamie Hatfield
  - Re: Re: Bio::FPC, Jamie Hatfield
    - Re: Re: Bio::FPC, Jason Stajich
    - RE: Re: Bio::FPC, Brian Osborne
    - RE: Re: Bio::FPC, Jamie Hatfield
    - RE: Re: Bio::FPC, Brian Osborne
    - RE: Re: Bio::FPC, Ewan Birney
    - RE: Re: Bio::FPC, Jamie Hatfield
    - RE: Re: Bio::FPC, Brian Osborne
    - RE: Re: Bio::FPC, Jamie Hatfield
    - RE: Re: Bio::FPC, Brian Osborne
ClusterIO Parsing of dbSNP: Possible bug, Johnny Amos
- Re: ClusterIO Parsing of dbSNP: Possible bug, Allen Day
Bio::DB::GenBank and proxy, William Kenworthy
- RE: Bio::DB::GenBank and proxy, simon andrews (BI)
  - RE: Bio::DB::GenBank and proxy, William Kenworthy
- RE: Bio::DB::GenBank and proxy, simon andrews (BI)
  - RE: Bio::DB::GenBank and proxy, William Kenworthy
Bio::Tools::Run options, Josh Lauricha
- Re: Bio::Tools::Run options, Jason Stajich
installing scripts (was:Re: GFF scripts), Koen van der Drift
- Re: installing scripts (was:Re: GFF scripts), Koen van der Drift
  - Re: installing scripts (was:Re: GFF scripts), Jason Stajich
    - Re: installing scripts (was:Re: GFF scripts), Koen van der Drift
    - Re: installing scripts (was:Re: GFF scripts), Jason Stajich
    - Re: installing scripts (was:Re: GFF scripts), Ewan Birney
    - Re: installing scripts (was:Re: GFF scripts), Jason Stajich
    - Re: installing scripts (was:Re: GFF scripts), Ewan Birney
    - RE: installing scripts (was:Re: GFF scripts), Brian Osborne
    - Re: installing scripts (was:Re: GFF scripts), Koen van der Drift
    - Re: installing scripts (was:Re: GFF scripts), Ewan Birney
    - Re: installing scripts (was:Re: GFF scripts), Aaron J Mackey
    - RE: installing scripts (was:Re: GFF scripts), Brian Osborne
    - Re: installing scripts (was:Re: GFF scripts), Koen van der Drift
most trusted antivirus solution, a_rivers2
most trusted antivirus, a_richard_noel2
help needed, please, simabba
Re: hi, bkww
what up, beagle
Will subseq give complement?, Gray, John
- Re: Will subseq give complement?, Jason Stajich
- Will subseq give complement?, Gray, John
bioperl meeting at GMOD meeting in Sept, Scott Cain
- RE: bioperl meeting at GMOD meeting in Sept, Hilmar Lapp
  - RE: bioperl meeting at GMOD meeting in Sept, Chris Mungall
Re: BioGraphics tutorial problem, Scott Cain
- Re: BioGraphics tutorial problem, Scott Cain
  - Re: Re: BioGraphics tutorial problem, Christopher Fields
award-winning, a_rhodes2
BioPerl Installation, Lobvi Matamoros
- Re: BioPerl Installation, Patrick De Marta
  - RE: BioPerl Installation, Brian Osborne
- RE: BioPerl Installation, Brian Osborne
- Re: BioPerl Installation, yaofx
get sequences over pubmed, jochen
GFF scripts, Koen van der Drift
- RE: GFF scripts, Brian Osborne
  - Re: GFF scripts, Koen van der Drift
    - Re: GFF scripts, Koen van der Drift
    - RE: GFF scripts, Brian Osborne
    - Re: GFF scripts, Koen van der Drift
Re: Bioperl-l Digest, Vol 4, Issue 3, Scott Cain
- Re: Re: Bioperl-l Digest, Vol 4, Issue 3, Wes Barris
BioPipe & LFS, Josh Lauricha
- Re: BioPipe & LFS, LAI Loong Fong
  - Re: BioPipe & LFS, Josh Lauricha
- RE: BioPipe & LFS, Brian Osborne
Bio::Graphics, Laurence Amilhat
- Re: Bio::Graphics, Wes Barris
- Re: Bio::Graphics, Lincoln Stein
  - Re: Bio::Graphics, Christopher Fields
    - Re: Bio::Graphics, Lincoln Stein
XML -> Flat Query-Anchored & Identities, Fanteï Caujolle Yan
- RE: XML -> Flat Query-Anchored & Identities, simon andrews (BI)
load_gff.pl question, Shin Enomoto
- Re: load_gff.pl question, Scott Cain
  - Re: load_gff.pl question, Shin Enomoto
    - Re: load_gff.pl question, Scott Cain
    - Re: load_gff.pl question, Shin Enomoto
  - Re: Re: load_gff.pl question, Marcel van Batenburg
Extracting subsequences from genbank files, Rolf Nimzyk
Extracting GenBank Information, Michael Hughes
- Re: Extracting GenBank Information, Leonardo Marino-Ramirez
about error messages!, yaofx
problems with parsing hmmpfam, Sofia
- Re: problems with parsing hmmpfam, Jason Stajich
About Bio::DB::GenBank!, yaofx
- Re: About Bio::DB::GenBank!, Jonathan Manning
  - Re: About Bio::DB::GenBank!, Hilmar Lapp
  - Re: About Bio::DB::GenBank!, yaofx
problems with installing Bioperl on OSX, Madis Metsis
- Re: problems with installing Bioperl on OSX, Jason Stajich
  - RE: problems with installing Bioperl on OSX, Brian Osborne
- RE: problems with installing Bioperl on OSX, Christopher Cavnor
Installation question, Douglas Joubert
more inheritance, Richard Adams
Re: [Gmod-schema] Re: BioSQL or chado, SLetovsky
RE: Errors generated from example code in HOW-TO sect ion, simon andrews (BI)
- RE: Errors generated from example code in HOW-TO sect ion, Matthew Betts
Primer3, Imtiaz KHAN
- Re: Primer3, Shawn Hoon
RE: $_ assignment question, simon andrews (BI)
- Re: $_ assignment question, Jonathan Barber
  - Re: $_ assignment question, Dave Howorth
    - Re: $_ assignment question, Aaron J Mackey
    - Re: $_ assignment question, Dave Howorth
Report to Recipient(s), QOLOTUS05
Errors generated from example code in HOW-TO section, Wes Barris
- Re: Errors generated from example code in HOW-TO section, Jason Stajich
  - Re: Errors generated from example code in HOW-TO section, Hilmar Lapp
- Re: Errors generated from example code in HOW-TO section, Matthew Betts
  - Re: Errors generated from example code in HOW-TO section, Aaron J Mackey
Re: Panel add_track -label option does not work, Wes Barris
Re: Parsing a netblast file, Wes Barris
- Re: Parsing a netblast file, Jason Stajich
  - Re: Parsing a netblast file, Wes Barris