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August 29, 2003
- RE: aligning sequences with Bio::Tools::pSW, william.j.burtle
- RE: aligning sequences with Bio::Tools::pSW, Brian Osborne
- Re: Problem with load_seqdatabase -> Redhat9 problem, avilella
- Re: Bio::Graphics, Lincoln Stein
- Re: Bio::Graphics, Christopher Fields
- Re: doing a 1.2.3 release, Jason Stajich
- Re: doing a 1.2.3 release, Lincoln Stein
- RE: EMBOSS Alignment program [was aligning sequences withBio::Tools::pSW], Brian Osborne
- EMBOSS Alignment program [was aligning sequences with Bio::Tools::pSW], Jason Stajich
- bugs on branch; tests on main trunk, Ewan Birney
- Re: doing a 1.2.3 release, Ewan Birney
- RE: aligning sequences with Bio::Tools::pSW, Brian Osborne
- Re: doing a 1.2.3 release, Lincoln Stein
- RE: aligning sequences with Bio::Tools::pSW, Jason Stajich
- RE: aligning sequences with Bio::Tools::pSW, Brian Osborne
- RE: ace to msf format?, Brian Osborne
- Re: aligning sequences with Bio::Tools::pSW, william.j.burtle
- Re: Bio::Graphics, Lincoln Stein
- RE: aligning sequences with Bio::Tools::pSW, Brian Osborne
- Re: aligning sequences with Bio::Tools::pSW, Aaron J Mackey
- ace to msf format?, Wes Barris
August 28, 2003
- Re: aligning sequences with Bio::Tools::pSW, Shawn Hoon
- Re: How do you add a consensus to AlignIO?, Wes Barris
- aligning sequences with Bio::Tools::pSW, Joshua Bronson
- Re: Smith-Waterman question, Yee Man Chan
- Re: bp_extract_feature_seq.pl : --feature CDS error, Jason Stajich
- bp_extract_feature_seq.pl : --feature CDS error, Charles Hauser
- Re: doing a 1.2.3 release, Jason Stajich
- Re: doing a 1.2.3 release, Ewan Birney
- Re: doing a 1.2.3 release, Rob Edwards
- Re: doing a 1.2.3 release, Ewan Birney
- Re: taxonomy and speices, Jason Stajich
- Re: doing a 1.2.3 release, Jason Stajich
- RE: Re: Bio::FPC, Brian Osborne
- RE: Re: Bio::FPC, Jamie Hatfield
- RE: Re: Bio::FPC, Brian Osborne
- RE: taxonomy and speices, Brian Osborne
- taxonomy and speices, Juguang Xiao
- Re: How do you add a consensus to AlignIO?, Wes Barris
- Re: How do you add a consensus to AlignIO?, Jason Stajich
August 27, 2003
- How do you add a consensus to AlignIO?, Wes Barris
- Re: doing a 1.2.3 release, Ewan Birney
- RE: Re: Bio::FPC, Jamie Hatfield
- PiseWorkflow.pm, Catherine Letondal
- doing a 1.2.3 release, Jason Stajich
- Re: extract feature seq when split between 2 GenBank accessions, Jason Stajich
- Re: extract feature seq when split between 2 GenBank accessions, Charles Hauser
- Re: extract feature seq when split between 2 GenBank accessions, Jason Stajich
- extract feature seq when split between 2 GenBank accessions, Charles Hauser
- [BioPython] Open-Bio server downtime and IP address changes scheduled for Tuesday September 2nd 2003, Chris Dagdigian
- RE: Bio::Tools::Run::RemoteBlast: RID not found, Wiepert, Mathieu
- Bio::Tools::Run::RemoteBlast: RID not found, Sergey V. Orlov
August 26, 2003
- RE: RemoteBlast failing?, Wiepert, Mathieu
- RemoteBlast failing?, Johnny Amos
- RE: remote blast, Wiepert, Mathieu
- Remote Blast, Sunil Saluja
- Blast ridline changed? RemoteBlast seems to be failing..., Wiepert, Mathieu
- remote blast, Sunil Saluja
- RE: Re: Bio::FPC, Ewan Birney
- RE: Re: Bio::FPC, Brian Osborne
- RE: Re: Bio::FPC, Jamie Hatfield
- RE: Re: Bio::FPC, Brian Osborne
- about gff format to feature table format, Magic Fang
- Re: Fwd: [Volunteer] submitting modules (PiseWorkflow.pm), Catherine Letondal
- about gff format to feature table format, Magic Fang
- Re: abott gff manipunation, Jason Stajich
- Re: Fwd: [Volunteer] submitting modules, Jason Stajich
- abott gff manipunation, Magic Fang
- Re: Re: Bio::FPC, Jason Stajich
- Fwd: [Volunteer] submitting modules, James Freeman
August 21, 2003
- Re: parser for GCG flavor of FASTA ?, Martin A. Hansen
- RE: synteny, simon andrews (BI)
- automated response, Martin Hirst
- Re: synteny, Jason Stajich
- Re: GFF to gene structure pictures, Jason Stajich
- synteny, Andrew Ram
- GFF to gene structure pictures, Andrew Ram
- Re: parser for GCG flavor of FASTA ?, Jason Stajich
- parser for GCG flavor of FASTA ?, Martin A. Hansen
- Re: cgi script problem, Jason Stajich
- Re: cgi script problem [solved], Koen van der Drift
- cgi script problem, Koen van der Drift
August 14, 2003
- Re: the roundup (long), Steve Chervitz
- Re: question on installation, Josh Lauricha
- question on installation, Jiang Qian
- Re: Please help me with Footprinter, Jason Stajich
- Please help me with Footprinter, Ben Westover
- Re: Padded position in Consensus sequence, Jayaprakash Rudraraju
- Re: Padded position in Consensus sequence, Jamie Hatfield
- Padded position in Consensus sequence, Jayaprakash Rudraraju
- Re: Re: Bio::FPC, Jamie Hatfield
- Re: Installing Bioperl - Dependencies problem, Jason Stajich
- Installing Bioperl - Dependencies problem, Anelda Boardman
- Re: question about SeqIO and BSML DTD, Jason Stajich
- the roundup (long), Jason Stajich
August 13, 2003
- RE: Re: parsing BLAST html, Brian Osborne
- RE: Re: parsing BLAST html, Aaron J Mackey
- Re: [BioPerl] SeqIO BEGIN block kills Gbrowse, Mark Wilkinson
- Re: epcr to gff parser., Jason Stajich
- epcr to gff parser., Philip MacMenamin
- Bio::DB::GFF problem, Matthias Wahl
- SeqIO BEGIN block kills Gbrowse, Scott Cain
- RE: Re: parsing BLAST html, Brian Osborne
- Re: parsing BLAST html, Sofia
- Re: Help w/ AlignIO and consensus_iupac, Jason Stajich
August 12, 2003
- Re: installing scripts (was:Re: GFF scripts), Koen van der Drift
- problem with Graphics, Sean O'Brien
- Help w/ AlignIO and consensus_iupac, gadbermd
- Re: [BioPerl] Re: SeqIO BEGIN block kills Gbrowse, Jason Stajich
- Re: [BioPerl] Re: SeqIO BEGIN block kills Gbrowse, Mark Wilkinson
- Re: [BioPerl] Re: SeqIO BEGIN block kills Gbrowse, Mark Wilkinson
- Re: SeqIO BEGIN block kills Gbrowse, Jason Stajich
- SeqIO BEGIN block kills Gbrowse, Mark Wilkinson
- RE: Bio::DB::GenBank and proxy, William Kenworthy
- RE: installing scripts (was:Re: GFF scripts), Brian Osborne
- RE: Bio::DB::GenBank and proxy, simon andrews (BI)
- Re: parsing BLAST html, Jason Stajich
- parsing BLAST html, Aaron J Mackey
- RE: installing scripts (was:Re: GFF scripts), Brian Osborne
- question about SeqIO and BSML DTD, Susan Cassidy
- Re: Parsing html blast output?, Jason Stajich
- RE: Bio::DB::GenBank and proxy, William Kenworthy
- Re: installing scripts (was:Re: GFF scripts), Aaron J Mackey
- Re: installing scripts (was:Re: GFF scripts), Ewan Birney
- RE: Bio::DB::GenBank and proxy, simon andrews (BI)
- Re: Parsing html blast output?, Edith Schlagenhauf
- Bio::Tools::Run::RemoteBlast: RID not found, Eric Miska
- Parsing html blast output?, Wes Barris
- Re: ClusterIO Parsing of dbSNP: Possible bug, Allen Day
August 08, 2003
- Re: GFF scripts, Koen van der Drift
- Re: Re: BioGraphics tutorial problem, Christopher Fields
- RE: bioperl meeting at GMOD meeting in Sept, Chris Mungall
- RE: bioperl meeting at GMOD meeting in Sept, Hilmar Lapp
- Re: BioGraphics tutorial problem, Scott Cain
- Re: Will subseq give complement?, Jason Stajich
- Will subseq give complement?, Gray, John
- Will subseq give complement?, Gray, John
- bioperl meeting at GMOD meeting in Sept, Scott Cain
- RE: GFF scripts, Brian Osborne
- Re: BioPerl Installation, yaofx
- Re: GFF scripts, Koen van der Drift
August 07, 2003
- Re: GFF scripts, Koen van der Drift
- Re: load_gff.pl question, Shin Enomoto
- Re: load_gff.pl question, Scott Cain
- Re: BioGraphics tutorial problem, Scott Cain
- award-winning, a_rhodes2
- RE: BioPerl Installation, Brian Osborne
- RE: BioPerl Installation, Brian Osborne
- Re: BioPerl Installation, Patrick De Marta
- BioPerl Installation, Lobvi Matamoros
- RE: GFF scripts, Brian Osborne
- get sequences over pubmed, jochen
- Re: load_gff.pl question, Shin Enomoto
- Re: Re: Bioperl-l Digest, Vol 4, Issue 3, Wes Barris
- Re: Bio::Graphics, Wes Barris
August 06, 2003
- GFF scripts, Koen van der Drift
- Re: Bioperl-l Digest, Vol 4, Issue 3, Scott Cain
- Re: load_gff.pl question, Scott Cain
- RE: BioPipe & LFS, Brian Osborne
- Re: BioPipe & LFS, Josh Lauricha
- Re: BioPipe & LFS, LAI Loong Fong
- BioPipe & LFS, Josh Lauricha
- Bio::Graphics, Laurence Amilhat
- RE: XML -> Flat Query-Anchored & Identities, simon andrews (BI)
- XML -> Flat Query-Anchored & Identities, Fanteï Caujolle Yan
August 01, 2003
- Re: About Bio::DB::GenBank!, Hilmar Lapp
- Re: Errors generated from example code in HOW-TO section, Hilmar Lapp
- Re: About Bio::DB::GenBank!, Jonathan Manning
- RE: problems with installing Bioperl on OSX, Christopher Cavnor
- RE: problems with installing Bioperl on OSX, Brian Osborne
- Re: problems with installing Bioperl on OSX, Jason Stajich
- Re: $_ assignment question, Dave Howorth
- About Bio::DB::GenBank!, yaofx
- problems with installing Bioperl on OSX, Madis Metsis
- Re: $_ assignment question, Aaron J Mackey
- Installation question, Douglas Joubert
- Re: $_ assignment question, Dave Howorth
- more inheritance, Richard Adams
- Re: [Gmod-schema] Re: BioSQL or chado, SLetovsky
- Re: Errors generated from example code in HOW-TO section, Jason Stajich
- Re: $_ assignment question, Jonathan Barber
- Re: Errors generated from example code in HOW-TO section, Aaron J Mackey
- Re: Primer3, Shawn Hoon
- RE: Errors generated from example code in HOW-TO sect ion, Matthew Betts
- RE: Errors generated from example code in HOW-TO sect ion, simon andrews (BI)
- Re: Errors generated from example code in HOW-TO section, Matthew Betts
- Primer3, Imtiaz KHAN
- RE: $_ assignment question, simon andrews (BI)
- Report to Recipient(s), QOLOTUS05
- Errors generated from example code in HOW-TO section, Wes Barris
- Re: Parsing a netblast file, Wes Barris
- Re: Panel add_track -label option does not work, Wes Barris
- Re: Parsing a netblast file, Jason Stajich
- Re: Parsing a netblast file, Wes Barris
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