Re: Different versions of biosql schema and bioperl-db

Multiple people have asked the same question lately, for answers check 
the mailing list archives. Specifically, read
http://open-bio.org/pipermail/biosql-l/2003-March/000287.html

and

http://open-bio.org/pipermail/bioperl-l/2003-March/011774.html

The biosql release will be announced on biosql-l, so you may want to be 
subcribed to that list.
        -hilmar

On Friday, March 28, 2003, at 12:48  AM, Zayed Albertyn wrote:

> Hi
>
> I am trying use the biosql schema to create a sequence database but it
> doesnt seem to be working. The problem is with loading a set of 
> sequences
> into a database.
>
> I am working with the bioperl 1.0.2 and the biosql schema (downloaded 
> 14th
> March). There seems to be some kind of incompatibilities between the
> load_seqdatabase.pl script and the mysql table because I get the 
> following
> error message:  My sequences are all in Genbank format and I have 
> checked
> that bioperl-db is installed.
>
> DBD::mysql::st execute failed: Unknown column 'display_id' in 'field 
> list'
> at /usr/lib/perl5/site_perl/5.6.1/Bio/DB/SQL/SeqAdaptor.pm line 427,
> <GEN0> line 169.
> DBD::mysql::st execute failed: Unknown column 'display_id' in 'field 
> list'
> at /usr/lib/perl5/site_perl/5.6.1/Bio/DB/SQL/SeqAdaptor.pm line 427,
> <GEN0> line 169.
>
>
> Please help.
> Thanks
> Zayed
>
> -----------------------------------------------
> From: Zayed Albertyn
> Electric Genetics PTY Ltd
> Tel: +27 21 959 3645; Mobile: +2782 480 6097
> www.egenetics.com
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@xxxxxxxxxxx
> http://bioperl.org/mailman/listinfo/bioperl-l
--
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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