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lang.perl.bio.general (date)

March 31, 2003

Re: bioperl-1.2.1 - Release Candidiate 2, Lincoln Stein
Re: BioGraphics problem, Lincoln Stein
Re: {SPECS] Sequence meta data, Heikki Lehvaslaiho
Re: bioperl-1.2.1 - Release Candidiate 2, Bob Freeman
Re: BioGraphics problem, Ewan Birney
1.2.1 released, Ewan Birney
Re: {SPECS] Sequence meta data, Robson Francisco de Souza
BioGraphics problem, Andrew M. Hynes
Re: bioperl-1.2.1 - Release Candidiate 2, Heikki Lehvaslaiho
Re: bioperl-1.2.1 - Release Candidiate 2, Ewan Birney
{SPECS] Sequence meta data, Heikki Lehvaslaiho
Re: bioperl-1.2.1 - Release Candidiate 2, Heikki Lehvaslaiho
Re: bioperl-1.2.1 - Release Candidiate 2, Ewan Birney
[cpan #667] Make Maker with LARGE module list (fwd), Jason Stajich
Re: bioperl-1.2.1 - Release Candidiate 2, Rob Edwards

March 30, 2003

Re: common ancestor for ontology terms, Matthew Pocock
Re: bioperl-1.2.1 - Release Candidiate 2, chris dagdigian
Re: bioperl-1.2.1 - Release Candidiate 2, Jason Stajich
bioperl-1.2.1 - Release Candidiate 2, Ewan Birney

March 28, 2003

Re: Is there any data model available for systematics classes ?, Guillaume Rousse
Re: common ancestor for ontology terms, Chris Mungall
Re: Different versions of biosql schema and bioperl-db, dugas
Re: Different versions of biosql schema and bioperl-db, dugas
Re: Philosophy, BioPerl Object Creation, Heikki Lehvaslaiho
Re: Different versions of biosql schema and bioperl-db, Hilmar Lapp
Different versions of biosql schema and bioperl-db, Zayed Albertyn
Re: Bio::Search::XXX::GenericXXX vs. Bio::Search::XXX::BlastXXX, Ewan Birney
common ancestor for ontology terms, Hilmar Lapp

March 27, 2003

Re: parent <-> subject etc, Hilmar Lapp
Re: Bio::Search::XXX::GenericXXX vs. Bio::Search::XXX::BlastXXX, Steve Chervitz
Re: bioperl-db & biperl version, Hilmar Lapp
April fools prank, Mike
Re: about query in GenBank, Remo Sanges
about query in GenBank, Yanan Yu
Re: Philosophy, BioPerl Object Creation, Hilmar Lapp
Re: Philosophy, BioPerl Object Creation, Hilmar Lapp
Windows PPM3 archive for Bioperl 1.2, Nigam Shah
Re: Bio::Tools::Run::StandAloneBlast, Qiang TU
Re: Bio::Search::XXX::GenericXXX vs. Bio::Search::XXX::BlastXXX, Jason Stajich
Bio::Search::XXX::GenericXXX vs. Bio::Search::XXX::BlastXXX, Luc . Gauthier
bioperl-db & biperl version, dugas
Re: Philosophy, BioPerl Object Creation, Heikki Lehvaslaiho
Re: Bio::Tools::Run::StandAloneBlast, James Wasmuth
Re: Philosophy, BioPerl Object Creation, Matthew Pocock
Bio::Tools::Run::StandAloneBlast, Luc . Gauthier

March 26, 2003

Re: Philosophy, BioPerl Object Creation, Hilmar Lapp
RE: Philosophy, BioPerl Object Creation [was QueryUnigene title from input a ACC number], Jamie Hatfield \(AGCoL\)
Re: Philosophy, BioPerl Object Creation [was Query Unigene title from input a ACC number], Hilmar Lapp
How to install CPAN's modules needed by BioPerl, ying lin
RE: How to install CPAN's modules needed by BioPerl, Wiepert, Mathieu
Ignore my latest message.Issue raised., ying lin
Re: use warnings, Heikki Lehvaslaiho
use warnings, Aaron J Mackey
Re: Bio:Tools::Primer3, Bio::Seq::PrimedSeq, and Bio::SeqFeature::Primer, Heikki Lehvaslaiho
Re: Philosophy, BioPerl Object Creation [was Query Unigene title from input a ACC number], James Gilbert
Re: [BioSQL-l] Re: Error in loading into biosql database, Yves Bastide
Ignore previous message, issue already raised!, Brian Wilhelm
(unknown), Brian Wilhelm
Re: Error in loading into biosql database, Hilmar Lapp
Re: Error in loading into biosql database, Aaron J Mackey
Re: Bio:Tools::Primer3, Bio::Seq::PrimedSeq, and Bio::SeqFeature::Primer, Jason Stajich
Re: handling GFF format, Jason Stajich
Re: Bio:Tools::Primer3, Bio::Seq::PrimedSeq, and Bio::SeqFeature::Primer, Rob Edwards

March 25, 2003

Re: Error in loading into biosql database, Hilmar Lapp
handling GFF format, Jack Chen
Re: Query Unigene title from input a ACC number, Andrew Macgregor
RE: Philosophy, BioPerl Object Creation [was Query Unigene title from input a ACC number], Jamie Hatfield \(AGCoL\)
RE: Query Unigene title from input a ACC number / BioPerl Object Creation, Ewan Birney
Philosophy, BioPerl Object Creation [was Query Unigene title from input a ACC number], Jason Stajich
RE: Query Unigene title from input a ACC number / BioPerl Object Creation, Jamie Hatfield \(AGCoL\)
RE: Query Unigene title from input a ACC number / BioPerl Object Creation, Jason Stajich
RE: Query Unigene title from input a ACC number / BioPerl Object Creation, Jamie Hatfield \(AGCoL\)
Re: RE: [Gmod-gbrowse] Some minor bugs/observations, Lincoln Stein
Re: Bioperl module for upstream/downstream genes ?, Charles Alexander
RE: RE: [Gmod-gbrowse] Some minor bugs/observations, Brian Osborne
Re: [BioSQL-l] Re: parent <-> subject etc, Matthew Pocock
Re: parent <-> subject etc, Aaron J Mackey
Re: parent <-> subject etc, Ewan Birney
Re: Bioperl module for upstream/downstream genes ?, Ewan Birney
Re: parent <-> subject etc, Hilmar Lapp
Query Unigene title from input a ACC number, darson
Re: parent <-> subject etc, Chris Mungall
Re: parent <-> subject etc, Chris Mungall
Re: Is there a way to manually install Bundle::BioPerl, Jason Stajich

March 24, 2003

help find new dependencies to list in Bundle::Bioperl, chris dagdigian
Is there a way to manually install Bundle::BioPerl, John Dayton
Re: Need help, Lincoln Stein
Re: parent <-> subject etc, Hilmar Lapp
RE: RE: [Gmod-gbrowse] Some minor bugs/observations, Marc Logghe
RE: [Gmod-gbrowse] Some minor bugs/observations, Marc Logghe
Re: parent <-> subject etc, Hilmar Lapp
Re: parent <-> subject etc, Chris Mungall
Re: Fwd: [GMOD-devel] GO::TermFinder Announcement, Hilmar Lapp
Re: gff -> gene, or exonerate ->gene?, Lincoln Stein
Re: parent <-> subject etc, Hilmar Lapp
Bioperl module for upstream/downstream genes ?, Charles A. Alexander
Re: Bio::Graphics::Panel can't locate object method 'start'..., Lincoln Stein
Re: parent <-> subject etc, Lincoln Stein
Fwd: [GMOD-devel] GO::TermFinder Announcement, Lincoln Stein
Re: problem installing Bioperl, Jason Stajich
Re: Fascinating bug..., Lincoln Stein
Re: error with files containing multiple BSML formatted entries, Lincoln Stein
Re: make biodesign.pod and bioperl.pod fails, Hilmar Lapp
gff -> gene, or exonerate ->gene?, Charles Hauser
problem installing Bioperl, Dave Howorth

March 21, 2003

Re: Re: [BioSQL-l] towards schema freeze, Ewan Birney
Re: Bio:Tools::Primer3, Bio::Seq::PrimedSeq, and Bio::SeqFeature::Primer, Elia Stupka
hackers guide, Rob Edwards
Bio:Tools::Primer3, Bio::Seq::PrimedSeq, and Bio::SeqFeature::Primer, Rob Edwards

March 20, 2003

make biodesign.pod and bioperl.pod fails, Hilmar Lapp
RE: transcribe..., Brian Osborne
Re: [BioSQL-l] towards schema freeze, Yves Bastide
Re: [BioSQL-l] towards schema freeze, Hilmar Lapp
transcribe..., Vasudevan, Geetha
RE: RE: Bioperl-l Digest, Vol 3, Issue 45, Brian Osborne
RE: Bioperl-l Digest, Vol 3, Issue 45, Clancy, Kevin
RE: Question regarding NR database, Brian Osborne
Re: Question regarding NR database, Jason Stajich
Question regarding NR database, Kerr Wall
Re: BioPerl GFF scripts, Lincoln Stein

March 19, 2003

Re: Error in loading into biosql database, Hilmar Lapp
Re: Error in loading into biosql database, Siddhartha Basu
Fascinating bug..., Matthew Vaughn
Re: parent <-> subject etc, Chris Mungall
Re: parent <-> subject etc, Hilmar Lapp
Re: Error in loading into biosql database, Hilmar Lapp
Re: parent <-> subject etc, Chris Mungall
Re: Error in loading into biosql database, Siddhartha Basu
parent <-> subject etc, Hilmar Lapp
RE: Tracking database dates in BLAST, Wiepert, Mathieu
RE: Tracking database dates in BLAST, Jason Stajich
RE: Tracking database dates in BLAST, Wiepert, Mathieu
RE: Tracking database dates in BLAST, Brian Osborne
Tracking database dates in BLAST, Andy Nunberg
RE: how to translate a codon to 3 letters aa code?, Marc Logghe
Scandinavian Perl Workshop, Lars G. T. Jorgensen
Re: how to translate a codon to 3 letters aa code?, Magic Fang
RE: how to translate a codon to 3 letters aa code?, Marc Logghe
Re: RelationshipI has no distance, Ewan Birney
how to translate a codon to 3 letters aa code?, Magic Fang
Re: RelationshipI has no distance, Chris Mungall
RelationshipI has no distance, Hilmar Lapp
bioperl-db works against the biosql HEAD, Hilmar Lapp

March 18, 2003

Link GenBank to LocusLink, Stephen Wang
Re: Bio::SearchIO::Writer::HSPTableWriter arguments, Remo Sanges
RE: Bio::SearchIO::Writer::HSPTableWriter arguments, Brian Osborne
Re: Bio::SearchIO::Writer::HSPTableWriter arguments, Jason Stajich
Bio::SearchIO::Writer::HSPTableWriter arguments, Remo Sanges
Re: Error in loading into biosql database, Hilmar Lapp
Re: Error in loading into biosql database, Siddhartha Basu

March 17, 2003

Re: Extracting domain# from hmmpfam output, Jason Stajich
Extracting domain# from hmmpfam output, Diane Benz (CCGB)
Re: StandAloneBlast & SeqIO very strange stream, Jason Stajich
StandAloneBlast & SeqIO very strange stream, Remo Sanges
Re: Re:Bio::Species Bug/question, Heikki Lehvaslaiho
Re: Error in loading into biosql database, Hilmar Lapp

March 16, 2003

Re: 1.2.1 rc1, Chris Dagdigian
1.2.1 rc1, Ewan Birney
Error in loading into biosql database, Siddhartha Basu

March 14, 2003

Re: parsing sim4 results, Jason Stajich
RE: parsing sim4 results, Brian Osborne
parsing sim4 results, Charles Hauser
Re: Bio::Graphics::Panel can't locate object method 'start'..., Benjamin Berman
error with files containing multiple BSML formatted entries, Kevin Clancy
Re: script installation, Lincoln Stein
Re: Panel.pm, Lincoln Stein
Re: Bio::Graphics::Panel can't locate object method 'start'..., Lincoln Stein
Re: Re:Bio::Species Bug/question, Hilmar Lapp
Re: GenericResult.pm and HMMERResult.pm question, Jason Stajich
RE: GenericResult.pm and HMMERResult.pm question, Brian Osborne
RE: Installation error, please help!, Brian Osborne
Re: more on the bl2seq error, Ewan Birney
GenericResult.pm and HMMERResult.pm question, Diane Benz (CCGB)
more on the bl2seq error, Steven Cannon
Re:Bio::Species Bug/question, James Gilbert
Installation error, please help!, darson

March 13, 2003

Re: Summary about ontologies in bioperl, Hilmar Lapp
Re: Using SeqIO, Hilmar Lapp
RE: Using SeqIO, Brian Carlson
RE: Using SeqIO, Brian Osborne
Re: Bio::DB::GFF dna doesn't work, Lincoln Stein
Using SeqIO, Brian Carlson
Bio::DB::GFF dna doesn't work, Philippe Vaglio
RE: [Bioperl-guts-l] bioperl commit, Aaron J Mackey
Summary about ontologies in bioperl, Guillaume Rousse
Re: Is there any data model available for systematics classes ?, Jason Stajich
Is there any data model available for systematics classes ?, Guillaume Rousse
Re: RE: [Bioperl-guts-l] bioperl commit, Jason Stajich
RE: [Bioperl-guts-l] bioperl commit, Brian Osborne
Re: [Bioperl-guts-l] bioperl commit, Aaron J Mackey
Re: Re-organized ontology modules are in the branch, Ewan Birney
Re-organized ontology modules are in the branch, Hilmar Lapp
RE: cigar string in GenericHSP, Jason Stajich
RE: cigar string in GenericHSP, Jason Stajich
bl2seq memory problem?, Steven Cannon

March 12, 2003

Re: is dev.open-bio.org still the CVS server?, Benjamin Berman
is dev.open-bio.org still the CVS server?, Benjamin Berman
Re: undef, Aaron J Mackey
RE: cigar string in GenericHSP, Marc Logghe
RE: cigar string in GenericHSP, Bob Freeman
undef, Brian Osborne
RE: [Bioperl-guts-l] bioperl commit, Brian Osborne
Re: [Bioperl-guts-l] bioperl commit, Aaron J Mackey
RE: Bug 1386, Brian Osborne
Re: Bug 1386, Prachi Shah
Note to Bundle maintainer, Brian Osborne
Panel.pm, Christian Greggio
RE: cigar string in GenericHSP, Marc Logghe
Re: cigar string in GenericHSP, Ewan Birney
Re: cigar string in GenericHSP, Elia Stupka
Re: cigar string in GenericHSP, Jason Stajich
Re: cigar string in GenericHSP, Jason Stajich
cigar string in GenericHSP, Juguang Xiao
primer3 module help, Matthew Hill

March 11, 2003

Re: Annotations and annotation tags can be Ontology Terms, Hilmar Lapp
Re: script installation, Hilmar Lapp
Bug 1386, Brian Osborne
RE: Primer design?, Brian Osborne
RE: bpindex/bpfetch work for me:, Brian Osborne
RE: bpindex/bpfetch work for me:, Ewan Birney
RE: script installation, Aaron J Mackey
RE: bpindex/bpfetch work for me:, Wiepert, Mathieu
RE: script installation, Jason Stajich
Bio::SeqFeature::Gene fixes, Keith James
RE: Using bioperl to blast against "Homo sapiens genomiccontig sequences," not nr, Wiepert, Mathieu
RE: script installation, Aaron J Mackey
RE: script installation, Brian Osborne
Primer design?, Jun Wan
Re: script installation, Heikki Lehvaslaiho
WARNING INCOMING: collection consolidation, Donald G. Jackson
script installation, Brian Osborne
Re: Bioperl + Oracle 8i Database, Ewan Birney
Re: Bioperl + Oracle 8i Database, Ewan Birney
Re: Annotations and annotation tags can be Ontology Terms, Ewan Birney
Re: all tests pass!, Ewan Birney
Re: Ontology overhaul: migration to branch imminent, Ewan Birney
Using bioperl to blast against "Homo sapiens genomic contig sequences," not nr, Mark Wagner
Re: $hsp->query->strand, Elia Stupka
Re: BioFetch_DB.t fails 4 tests, Elia Stupka
Re: Bioperl + Oracle 8i Database, Elia Stupka
Bioperl + Oracle 8i Database, adam jordan
Annotations and annotation tags can be Ontology Terms, Hilmar Lapp

March 10, 2003

all tests pass!, Hilmar Lapp
IdentifiableI and LSIDs: towards a better future, Gudmundur Arni Thorisson
RE: Bioperl for ppm3, Nigam Shah
Ontology overhaul: migration to branch imminent, Hilmar Lapp
Re: BioFetch_DB.t fails 4 tests, Hilmar Lapp
Re: Bioperl stability, Ewan Birney
RE: [NORDNS] RE: using BioPerl.ppd with ActiveState, Brian Osborne
[Bioperl-guts-l] [RFC] Module names (fwd), Jason Stajich
RE: [NORDNS] RE: using BioPerl.ppd with ActiveState, Kevin Clancy
RE: [NORDNS] RE: using BioPerl.ppd with ActiveState, Brian Osborne
Re: Fwd: Re: Boxes and features..., William Boileau
RE: using BioPerl.ppd with ActiveState, Jason Stajich
RE: using BioPerl.ppd with ActiveState, Kevin Clancy
Re: Possibility of a developer being able to talk on Bioperl at a Bioinformatics specific Perl course, Heikki Lehvaslaiho
Re: BioFetch_DB.t fails 4 tests, Heikki Lehvaslaiho
RE: Bio::Root::Version functionality is in., Aaron J Mackey
Re: BioFetch_DB.t fails 4 tests, Heikki Lehvaslaiho
RE: Bio::Root::Version functionality is in., Brian Osborne
Re: $hsp->query->strand, Juguang Xiao
Possibility of a developer being able to talk on Bioperl at a Bioinformatics specific Perl course, Dr Dan Swan
Bioperl stability, Luc . Gauthier
Re: BioFetch_DB.t fails 4 tests, Aaron J Mackey
Re: Proposed bioperl submission, Donald G. Jackson
Re: BioFetch_DB.t fails 4 tests, Elia Stupka
Re: BioFetch_DB.t fails 4 tests, Aaron J Mackey
Re: BioFetch_DB.t fails 4 tests, Heikki Lehvaslaiho
BioFetch_DB tests, Elia Stupka
Re: $hsp->query->strand, Ewan Birney
Re: Proposed bioperl submission, Ewan Birney
$hsp->query->strand, Juguang Xiao

March 09, 2003

RE: using BioPerl.ppd with ActiveState, Brian Osborne
RE: Bio::Root::Version functionality is in., Brian Osborne
RE: Bio::Root::Version functionality is in., Aaron J Mackey
RE: Bio::Root::Version functionality is in., Brian Osborne
Bio::Root::Version functionality is in., Aaron J Mackey

March 07, 2003

using BioPerl.ppd with ActiveState, Kevin Clancy
Fwd: Re: Boxes and features..., Lincoln Stein
Re: Boxes and features..., Lincoln Stein
Re: SearchIO question, Steve Chervitz
Re: Automatic replication of databases and modules, Hilmar Lapp
Re: dev.open-bio.org down?, Lincoln Stein
Re: Dazed and Confused for 1.2.1, Lincoln Stein
Re: bug #1396: *.PL to *.pod conversion is broken, makebailsout, Hilmar Lapp
RE: SearchIO question, Brian Osborne
RE: bug #1396: *.PL to *.pod conversion is broken, makebailsout, Brian Osborne
Re: SearchIO question, Jason Stajich
Re: SearchIO question, Shin Enomoto
RE: bond() operator, Brian Osborne
Re: getting upstream regions, Lincoln Stein
Re: Bio::Ontology & Bio::OntologyIO, Lincoln Stein
Re: bond() operator, Hilmar Lapp
RE: SearchIO question, Brian Osborne
Re: SearchIO question, Shin Enomoto
Re: bug #1396: *.PL to *.pod conversion is broken, makebailsout, Aaron J Mackey
Re: bug #1396: *.PL to *.pod conversion is broken, makebailsout, Aaron J Mackey
Re: SearchIO question, Jason Stajich
Automatic replication of databases and modules, Lars G. T. Jorgensen
Re: Exception.t still fails, Ewan Birney
Re: Is there a parser for "seq_contig.md"?, Ewan Birney
SearchIO question, Shin Enomoto
Re: getting upstream regions, Mark Wagner
Re: bug #1396: *.PL to *.pod conversion is broken, makebailsout, Allen Day
Re: Exception.t still fails, Hilmar Lapp
Re: Exception.t still fails, Steve Chervitz
Re: Bio::DB::Taxonomy HTTPget query problem, Hilmar Lapp
Exception.t still fails, Hilmar Lapp
Re: Bio::DB::Taxonomy HTTPget query problem, Aaron J Mackey
BioFetch_DB.t fails 4 tests, Hilmar Lapp
Bio::DB::Taxonomy HTTPget query problem, Hilmar Lapp
Re: bug #1396: *.PL to *.pod conversion is broken, makebailsout, Aaron J Mackey
Re: Is there a parser for "seq_contig.md"?, Hilmar Lapp
Re: Bio::Ontology & Bio::OntologyIO, Hilmar Lapp
Is there a parser for "seq_contig.md"?, Sang Chul Choi

March 06, 2003

Re: problem unigene parsing, Siddhartha Basu
getting upstream regions, Josh Burdick
Re: bug #1396: *.PL to *.pod conversion is broken, makebailsout, Hilmar Lapp
Re: bug #1396: *.PL to *.pod conversion is broken, makebailsout, Allen Day
Re: unaligned sequences breaks hqd analysis, Robson Francisco de Souza
Re: bug #1396: *.PL to *.pod conversion is broken, makebailsout, Hilmar Lapp
Re: dev.open-bio.org down?, Jason Stajich
dev.open-bio.org down?, Scott Cain
Re: [SO-devel] Re: GFF3 preliminary - NOW not NOT, Jim Kent
RE: about the iupac, Brian Osborne
RE: bug #1396: *.PL to *.pod conversion is broken, makebailsout, Aaron J Mackey
Re: Boxes and features..., William Boileau
RE: bug #1396: *.PL to *.pod conversion is broken, makebailsout, Brian Osborne
Re: [SO-devel] Re: GFF3 preliminary - NOW not NOT, Richard Durbin
EnsEMBL-Bioperl converters proposal, Juguang Xiao
Re: Bio::Ontology & Bio::OntologyIO, Hilmar Lapp
Re: issue with closing tempfile and bl2seq, Samuel Andersson
Re: problem unigene parsing, Hilmar Lapp
Re: problem unigene parsing, Ewan Birney
Re: problem unigene parsing, Hilmar Lapp
Re: bug #1396: *.PL to *.pod conversion is broken, makebailsout, Hilmar Lapp
bug #1396: *.PL to *.pod conversion is broken, makebailsout, Allen Day
Re: problem unigene parsing, Siddhartha Basu
Re: problem unigene parsing, Andrew Macgregor
Re: problem unigene parsing, Andrew Macgregor
Re: about the iupac - It works..., hanfos
about the iupac, Magic Fang
Re: issue with closing tempfile and bl2seq, BHurwitz

March 05, 2003

problem unigene parsing, Siddhartha Basu
Dazed and Confused for 1.2.1, Ewan Birney
Re: issue with closing tempfile and bl2seq, Ewan Birney
Re: issue with closing tempfile and bl2seq, BHurwitz
Re: Added Phil Green's Smith-Waterman to my module, Yee Man
unaligned sequences breaks hqd analysis, Andy Nunberg
Re: Added Phil Green's Smith-Waterman to my module, Aaron J Mackey
Re: [SO-devel] Re: GFF3 preliminary, Jim Kent
Re: Added Phil Green's Smith-Waterman to my module, Yee Man
Re: issue with closing tempfile and bl2seq, Ewan Birney
Re: Added Phil Green's Smith-Waterman to my module, Yee Man
Re: [SO-devel] Re: GFF3 preliminary, Lincoln Stein
Re: Bio::Tools::Run::Genewise and HMMs, Jason Stajich
Bio::Tools::Run::Genewise and HMMs, Keith James
issue with closing tempfile and bl2seq, BHurwitz
Proposed submission: tools for designing RNAi oligos, Donald G. Jackson
Re: Added Phil Green's Smith-Waterman to my module, Aaron J Mackey
Re: [SO-devel] Re: GFF3 preliminary, Richard Durbin
Re: Fwd: Exception.t is still failing miserably, Steve Chervitz
Added Phil Green's Smith-Waterman to my module, Yee Man

March 04, 2003

Re: [SO-devel] Re: GFF3 preliminary, Suzanna Lewis
RE: parsing blast result: how to get query info?, Marc Logghe
Re: parsing blast result: how to get query info?, James Wasmuth
Re: parsing blast result: how to get query info?, Jason Stajich
Re: parsing blast result: how to get query info?, Jack Chen
Assembling scaffold-specific est contigs (blat), Charles Hauser
Bioperl List Summary - January 2003, Aaron J Mackey
predicting secondary structure, Richard Adams
Re: Removing seq from SimpleAlign, Jason Stajich
Re: parsing blast result: how to get query info?, Prachi Shah
Removing seq from SimpleAlign, James Wasmuth
RE: Fwd: Exception.t is still failing miserably, Brian Osborne
RE: bl2seq and SearchIO, Wiepert, Mathieu
Bio::Ontology & Bio::OntologyIO, Hilmar Lapp
Re: parsing blast result: how to get query info?, James Wasmuth
Re: bond() operator, Heikki Lehvaslaiho
Re: Fwd: Exception.t is still failing miserably, Heikki Lehvaslaiho
Re: Fwd: Exception.t is still failing miserably, Ewan Birney
Fwd: Exception.t is still failing miserably, Hilmar Lapp
Exception.t is still failing miserably, Hilmar Lapp
parsing blast result: how to get query info?, Jack Chen
bl2seq and SearchIO, Peter Schattner

March 03, 2003

Re: general Analysis client added, Martin Senger
Re: general Analysis client added, Catherine Letondal
Re: bond() operator, Hilmar Lapp
linking of LL to SP, Stephen Wang
general Analysis client added, Martin Senger
RE: SeqIO out of memory, Marc Logghe
Project Ideas: RemoteBlast extension, Jason Stajich
RE: SeqIO out of memory, Brian Osborne
Re: Boxes and features..., Lincoln Stein
RE: SeqIO out of memory, Ewan Birney
RE: SeqIO out of memory, Jason Stajich
RE: SeqIO out of memory, Aaron J Mackey
RE: SeqIO out of memory, Brian Osborne
Re: Boxes and features..., William Boileau
RE: SeqIO out of memory, Brian Osborne
Re: introducing news.open-bio.org and new Bioperl news system, Elia Stupka
Re: introducing news.open-bio.org and new Bioperl news system, Peter Masiar

March 01, 2003

Re: Bio::Graphics::Panel can't locate object method 'start'..., Ewan Birney
Re: Bio::Graphics::Panel can't locate object method 'start'..., Lincoln Stein
Bio::Graphics::Panel can't locate object method 'start'..., Matthew Vaughn
Re: predicting secondary structure, Elia Stupka
Fwd: [Contrib-Rpm] perl-Bioperl-1.2-1mdk, Guillaume Rousse
Re: SeqIO out of memory, Ewan Birney
Re: SeqIO out of memory, Ewan Birney
RE: introducing news.open-bio.org and new Bioperl news system, nkuipers

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