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particle analysis-Feret diameter: msg#00195java.imagej
I needed similar data a few years ago, and added a feature to a plugin to calculate distances to the convex hull from various centres, using the min, max, mean, and coefficient of variation amongst all possibles. Philippe Grosjean <phgrosjean@xxxxxxxxxxxx> wrote:Hi all, If my understanding of Feret diameter in ImageJ is correct, this is the *maximum* one, calculated at various angles. But how many angles are considered? I browse the source code rapidly, and found several getFeretsDiameter() functions (ij.gui.OvalRoi, PolygonRoi, Roi & ShapeRoi). In particular, in ShapeRoi, you also have a getMinFeret() function, but it is commented out. Apparently, shape is rotated every degree in these function? Anyway, I join Mr Kachrimanis in a request for reporting also the *minimum* (and possibly the *mean*) Feret diameter. A lot of derived measurements can be done if you have those additional measurements. My plan for the future is to patch ImageJ to report those. This should not be too difficult... unfortunatelly, I am not a Java programmer and have little free time now. So, this is a pain for me, and I will not do it before one year, or so (I still hope to see it added in a future version of ImageJ). Best, Philippe Grosjean P.S.: by the way, many thanks for adding 'Skew' and 'Kurt' in the particle analyzer in the latest version of ImageJ! ..............................................<°}))><........ ) ) ) ) ) ( ( ( ( ( Prof. Philippe Grosjean ) ) ) ) ) ( ( ( ( ( Numerical Ecology of Aquatic Systems ) ) ) ) ) Mons-Hainaut University, Pentagone (3D08) ( ( ( ( ( Academie Universitaire Wallonie-Bruxelles ) ) ) ) ) 8, av du Champ de Mars, 7000 Mons, Belgium ( ( ( ( ( ) ) ) ) ) phone: + 32.65.37.34.97, fax: + 32.65.37.30.54 ( ( ( ( ( email: Philippe.Grosjean@xxxxxxxxx ) ) ) ) ) ( ( ( ( ( web: http://www.umh.ac.be/~econum ) ) ) ) ) http://www.sciviews.org ( ( ( ( ( .............................................................. K. Kachrimanis wrote: > Dear all, > > I have a question or rather a feature request related to the particle > analysis, which so far has limited functionality copared to commercial > software packages in regard to particle size and shape analysis. I have > noticed that there is a Feret diameter included in the module, but it is not > clear at which orientation is this Feret measured. Since Feret diameters > depend on particle orientation, a Feret at a single orientation is virtually > useless, particularly when one has to deal with elongated particles. Would it > be possible to include more Ferets, at different angles, and also add an > automatic selection of maximum and minimum Ferets? This would enable the > calculation of the aspect ratio and other relevant shape descriptors. > > Regards, > > K.Kachrimanis. > >
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