|
|
Choosing A Webhost: |
Re: BlastXMLParserFacade: msg#00026java.bio.general
On Friday 12 Mar 2004 11:17 am, Matthew Pocock wrote: > Hi, > > The parser shouldn't be throwing a NPE. However, the NCBI blast xml > output didn't used to be well-formed XML, so was not parseable by any > XML parser. I don't know if this has since been fixed by the NCBI. > In this case, that's not the problem. The problem started when we switched from the Xerces parsers to Sun's own and no attempt on my part was successful in getting it it use the NCBI's DTD. Part of the problem is that DTD from NCBI refers to other DTDs and those references are not complete so my code used to explicitly resolve them but with Sun's parser, I could never convince it to use the provided DTDs. I don't have time to return to that problem for a while so perhaps someone else more familiar with Crimson could figure it out. Alternatively, we could hack it to not use DTDs at all (totally non-validating). Regards, David _______________________________________________ Biojava-l mailing list - Biojava-l@xxxxxxxxxxx http://biojava.org/mailman/listinfo/biojava-l
|
|
| <Prev in Thread] | Current Thread | [Next in Thread> |
|---|---|---|
| Previous by Date: | Re: BlastXMLParserFacade, Matthew Pocock |
|---|---|
| Next by Date: | Re: BlastXMLParserFacade, Dan Bolser |
| Previous by Thread: | Re: BlastXMLParserFacade, Matthew Pocock |
| Next by Thread: | Re: BlastXMLParserFacade, Thomas Down |
| Indexes: | [Date] [Thread] [Top] [All Lists] |
Free MagazinesCisco NewsReceive a free quarterly e-newsletter with exclusive articles on how Cisco IT uses its own products and solutions to enable the business. subscribe Systems Management News, the newspaper for IT systems administration and data center managers! Each issue of Systems Management News is chock-full of news and analysis to help you understand what's happening in your field. subscribe The Enterprise Newsweekly eWeek is the essential technology information source for builders of e-business. subscribe Oracle Magazine Oracle Magazine contains technology strategy articles, sample code, tips, Oracle and partner news, how to articles for developers and DBAs, and more. Oracle (NASDAQ: ORCL) is the world's largest enterprise software company. subscribe Total Telecom Total Telecom is "The Economist of the communications industry". subscribe |
Home
| advertise | OSDir is
an inevitable website.
|