Recommendation for how to handle workspace with "processing" contributions

While I have been working on Ofbiz for a while, I have not made a good enough
effort to contribute back bug fixes and enhancements that I feel would be
valuable to the product.  I have started to do this, but I have a question
about how people handle their workspace while they are waiting for
contributions to be approved/rejected.

I have created a few JIRAs and attached patch files to them for my changes. 
However, as I do more and more work I end up with more and more changes in
my workspace that are updated.  It will ultimately become very difficult to
determine which files I should include in the next patch; moreover I may
result in dependencies.

Does any non-contributor (or contributor for that matter) have a suggestion
on how to manage this?  I am thinking about using Mylyn and the JIRA
integration to relate the files.  This does not help the patch generation
...

Anyone have a better suggestion?
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