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Re:Kryo Exception


Hi,

FYI, this is the JIRA ticket for the issue: https://issues.apache.org/jira/browse/FLINK-8836
Yes, this seems to be only included in 1.5.0 (to be released), and 1.4.3 (there has been no discussion on releasing that yet).

It could also be possible that the reported issue was caused by https://issues.apache.org/jira/browse/FLINK-9263 (which has a fix included in 1.5.0)?

Cheers,
Gordon

On 25 May 2018 at 11:39:03 AM, sihua zhou (summerleafs@xxxxxxx) wrote:

Hi,
this looks like the bug "when duplicating a KryoSerializer does not duplicate registered default serializers", and this has been fixed on the branch master, 1.5.0, and 1.4.x. But, unfortunately not included in 1.4.2(because this bug was discovered after 1.4.2 release). @Stefan plz correct me if I'm wrong.


Best, Sihua

On 05/25/2018 05:55Ya-Te Wong<yate.wong@xxxxxxxxx> wrote:
Hello,

We're using Flink version 1.4.2.
Our Flink job runs pretty well most of the time. But sometimes we see exceptions in the Kryo serializer.
The timing on when the exceptions would occur seems pretty random.
Sometimes we don't see any exceptions for 5 days. Sometimes we get exceptions within hours.
I have captured the stack traces of the last 3 times that the exceptions occurred. They are not exactly the same. The commonality is that our code in onTimer() is triggered as part of watermark handling. Our code then tried to get from the copy-on-write state table and eventually exception occurred in Kryo.

Has anyone seen something like that before?

Thanks,



[ Exception #1 ]

java.lang.RuntimeException: Exception occurred while processing valve output watermark:
at org.apache.flink.streaming.runtime.io.StreamTwoInputProcessor$ForwardingValveOutputHandler2.handleWatermark(StreamTwoInputProcessor.java:400)
at org.apache.flink.streaming.runtime.streamstatus.StatusWatermarkValve.findAndOutputNewMinWatermarkAcrossAlignedChannels(StatusWatermarkValve.java:189)
at org.apache.flink.streaming.runtime.streamstatus.StatusWatermarkValve.inputWatermark(StatusWatermarkValve.java:111)
at org.apache.flink.streaming.runtime.io.StreamTwoInputProcessor.processInput(StreamTwoInputProcessor.java:252)
at org.apache.flink.streaming.runtime.tasks.TwoInputStreamTask.run(TwoInputStreamTask.java:91)
at org.apache.flink.streaming.runtime.tasks.StreamTask.invoke(StreamTask.java:264)
at org.apache.flink.runtime.taskmanager.Task.run(Task.java:718)
at java.lang.Thread.run(Thread.java:748)
Caused by: com.esotericsoftware.kryo.KryoException: java.lang.IndexOutOfBoundsException: Index: 3, Size: 0
Serialization trace:
timestamp (com.mycompany.datascience.datatypes.SensorStateEvent)
at com.esotericsoftware.kryo.serializers.ObjectField.read(ObjectField.java:125)
at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:528)
at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:657)
at org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer.copy(KryoSerializer.java:189)
at org.apache.flink.api.scala.typeutils.TraversableSerializer$$anonfun$copy$1.apply(TraversableSerializer.scala:69)
at org.apache.flink.api.scala.typeutils.TraversableSerializer$$anonfun$copy$1.apply(TraversableSerializer.scala:69)
at scala.collection.immutable.List.foreach(List.scala:392)
at scala.collection.generic.TraversableForwarder$class.foreach(TraversableForwarder.scala:35)
at scala.collection.mutable.ListBuffer.foreach(ListBuffer.scala:45)
at org.apache.flink.api.scala.typeutils.TraversableSerializer.copy(TraversableSerializer.scala:69)
at org.apache.flink.api.scala.typeutils.TraversableSerializer.copy(TraversableSerializer.scala:33)
at org.apache.flink.runtime.state.heap.CopyOnWriteStateTable.get(CopyOnWriteStateTable.java:282)
at org.apache.flink.runtime.state.heap.CopyOnWriteStateTable.get(CopyOnWriteStateTable.java:306)
at org.apache.flink.runtime.state.heap.HeapValueState.value(HeapValueState.java:55)
at com.mycompany.datascience.scala.pushnotifier.operators.UserStateSensorStateJoin.onTimer(UserStateSensorStateJoin.scala:145)
at org.apache.flink.streaming.api.operators.co.KeyedCoProcessOperator.onEventTime(KeyedCoProcessOperator.java:95)
at org.apache.flink.streaming.api.operators.HeapInternalTimerService.advanceWatermark(HeapInternalTimerService.java:288)
at org.apache.flink.streaming.api.operators.InternalTimeServiceManager.advanceWatermark(InternalTimeServiceManager.java:108)
at org.apache.flink.streaming.api.operators.AbstractStreamOperator.processWatermark(AbstractStreamOperator.java:885)
at org.apache.flink.streaming.api.operators.AbstractStreamOperator.processWatermark2(AbstractStreamOperator.java:912)
at org.apache.flink.streaming.runtime.io.StreamTwoInputProcessor$ForwardingValveOutputHandler2.handleWatermark(StreamTwoInputProcessor.java:397)
... 7 more
Caused by: java.lang.IndexOutOfBoundsException: Index: 3, Size: 0
at java.util.ArrayList.rangeCheck(ArrayList.java:653)
at java.util.ArrayList.set(ArrayList.java:444)
at com.esotericsoftware.kryo.util.MapReferenceResolver.setReadObject(MapReferenceResolver.java:38)
at com.esotericsoftware.kryo.Kryo.reference(Kryo.java:823)
at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:524)
at com.esotericsoftware.kryo.Kryo.readObjectOrNull(Kryo.java:730)
at com.esotericsoftware.kryo.serializers.ObjectField.read(ObjectField.java:113)
... 27 more



[ Exception #2 ]

java.lang.RuntimeException: Exception occurred while processing valve output watermark:
at org.apache.flink.streaming.runtime.io.StreamTwoInputProcessor$ForwardingValveOutputHandler2.handleWatermark(StreamTwoInputProcessor.java:400)
at org.apache.flink.streaming.runtime.streamstatus.StatusWatermarkValve.findAndOutputNewMinWatermarkAcrossAlignedChannels(StatusWatermarkValve.java:189)
at org.apache.flink.streaming.runtime.streamstatus.StatusWatermarkValve.inputWatermark(StatusWatermarkValve.java:111)
at org.apache.flink.streaming.runtime.io.StreamTwoInputProcessor.processInput(StreamTwoInputProcessor.java:252)
at org.apache.flink.streaming.runtime.tasks.TwoInputStreamTask.run(TwoInputStreamTask.java:91)
at org.apache.flink.streaming.runtime.tasks.StreamTask.invoke(StreamTask.java:264)
at org.apache.flink.runtime.taskmanager.Task.run(Task.java:718)
at java.lang.Thread.run(Thread.java:748)
Caused by: com.esotericsoftware.kryo.KryoException: Unable to find class: SerialNumber6H0G025
Serialization trace:
sensorState (com.mycompany.datascience.datatypes.SensorStateEvent)
at com.esotericsoftware.kryo.util.DefaultClassResolver.readName(DefaultClassResolver.java:138)
at com.esotericsoftware.kryo.util.DefaultClassResolver.readClass(DefaultClassResolver.java:115)
at com.esotericsoftware.kryo.Kryo.readClass(Kryo.java:641)
at com.esotericsoftware.kryo.serializers.ObjectField.read(ObjectField.java:99)
at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:528)
at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:657)
at org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer.copy(KryoSerializer.java:189)
at org.apache.flink.api.scala.typeutils.TraversableSerializer$$anonfun$copy$1.apply(TraversableSerializer.scala:69)
at org.apache.flink.api.scala.typeutils.TraversableSerializer$$anonfun$copy$1.apply(TraversableSerializer.scala:69)
at scala.collection.immutable.List.foreach(List.scala:392)
at scala.collection.generic.TraversableForwarder$class.foreach(TraversableForwarder.scala:35)
at scala.collection.mutable.ListBuffer.foreach(ListBuffer.scala:45)
at org.apache.flink.api.scala.typeutils.TraversableSerializer.copy(TraversableSerializer.scala:69)
at org.apache.flink.api.scala.typeutils.TraversableSerializer.copy(TraversableSerializer.scala:33)
at org.apache.flink.runtime.state.heap.CopyOnWriteStateTable.get(CopyOnWriteStateTable.java:282)
at org.apache.flink.runtime.state.heap.CopyOnWriteStateTable.get(CopyOnWriteStateTable.java:306)
at org.apache.flink.runtime.state.heap.HeapValueState.value(HeapValueState.java:55)
at com.mycompany.datascience.scala.pushnotifier.operators.UserStateSensorStateJoin.onTimer(UserStateSensorStateJoin.scala:145)
at org.apache.flink.streaming.api.operators.co.KeyedCoProcessOperator.onEventTime(KeyedCoProcessOperator.java:95)
at org.apache.flink.streaming.api.operators.HeapInternalTimerService.advanceWatermark(HeapInternalTimerService.java:288)
at org.apache.flink.streaming.api.operators.InternalTimeServiceManager.advanceWatermark(InternalTimeServiceManager.java:108)
at org.apache.flink.streaming.api.operators.AbstractStreamOperator.processWatermark(AbstractStreamOperator.java:885)
at org.apache.flink.streaming.api.operators.AbstractStreamOperator.processWatermark2(AbstractStreamOperator.java:912)
at org.apache.flink.streaming.runtime.io.StreamTwoInputProcessor$ForwardingValveOutputHandler2.handleWatermark(StreamTwoInputProcessor.java:397)
... 7 more
Caused by: java.lang.ClassNotFoundException: SerialNumber6H0G025
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at org.apache.flink.runtime.execution.librarycache.FlinkUserCodeClassLoaders$ChildFirstClassLoader.loadClass(FlinkUserCodeClassLoaders.java:128)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at com.esotericsoftware.kryo.util.DefaultClassResolver.readName(DefaultClassResolver.java:136)
... 30 more



[ Exception #3 ]

java.lang.RuntimeException: Exception occurred while processing valve output watermark:
at org.apache.flink.streaming.runtime.io.StreamTwoInputProcessor$ForwardingValveOutputHandler2.handleWatermark(StreamTwoInputProcessor.java:400)
at org.apache.flink.streaming.runtime.streamstatus.StatusWatermarkValve.findAndOutputNewMinWatermarkAcrossAlignedChannels(StatusWatermarkValve.java:189)
at org.apache.flink.streaming.runtime.streamstatus.StatusWatermarkValve.inputWatermark(StatusWatermarkValve.java:111)
at org.apache.flink.streaming.runtime.io.StreamTwoInputProcessor.processInput(StreamTwoInputProcessor.java:252)
at org.apache.flink.streaming.runtime.tasks.TwoInputStreamTask.run(TwoInputStreamTask.java:91)
at org.apache.flink.streaming.runtime.tasks.StreamTask.invoke(StreamTask.java:264)
at org.apache.flink.runtime.taskmanager.Task.run(Task.java:718)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ArrayIndexOutOfBoundsException: -1
at com.esotericsoftware.kryo.util.IntArray.pop(IntArray.java:157)
at com.esotericsoftware.kryo.Kryo.reference(Kryo.java:822)
at com.esotericsoftware.kryo.serializers.FieldSerializer.copy(FieldSerializer.java:625)
at com.esotericsoftware.kryo.Kryo.copy(Kryo.java:862)
at org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer.copy(KryoSerializer.java:175)
at org.apache.flink.api.scala.typeutils.TraversableSerializer$$anonfun$copy$1.apply(TraversableSerializer.scala:69)
at org.apache.flink.api.scala.typeutils.TraversableSerializer$$anonfun$copy$1.apply(TraversableSerializer.scala:69)
at scala.collection.immutable.List.foreach(List.scala:392)
at scala.collection.generic.TraversableForwarder$class.foreach(TraversableForwarder.scala:35)
at scala.collection.mutable.ListBuffer.foreach(ListBuffer.scala:45)
at org.apache.flink.api.scala.typeutils.TraversableSerializer.copy(TraversableSerializer.scala:69)
at org.apache.flink.api.scala.typeutils.TraversableSerializer.copy(TraversableSerializer.scala:33)
at org.apache.flink.runtime.state.heap.CopyOnWriteStateTable.get(CopyOnWriteStateTable.java:282)
at org.apache.flink.runtime.state.heap.CopyOnWriteStateTable.get(CopyOnWriteStateTable.java:306)
at org.apache.flink.runtime.state.heap.HeapValueState.value(HeapValueState.java:55)
at com.mycompany.datascience.scala.pushnotifier.operators.UserStateSensorStateJoin.onTimer(UserStateSensorStateJoin.scala:145)
at org.apache.flink.streaming.api.operators.co.KeyedCoProcessOperator.onEventTime(KeyedCoProcessOperator.java:95)
at org.apache.flink.streaming.api.operators.HeapInternalTimerService.advanceWatermark(HeapInternalTimerService.java:288)
at org.apache.flink.streaming.api.operators.InternalTimeServiceManager.advanceWatermark(InternalTimeServiceManager.java:108)
at org.apache.flink.streaming.api.operators.AbstractStreamOperator.processWatermark(AbstractStreamOperator.java:885)
at org.apache.flink.streaming.api.operators.AbstractStreamOperator.processWatermark2(AbstractStreamOperator.java:912)
at org.apache.flink.streaming.runtime.io.StreamTwoInputProcessor$ForwardingValveOutputHandler2.handleWatermark(StreamTwoInputProcessor.java:397)
... 7 more