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[jira] [Created] (FLINK-10204) Job is marked as FAILED after serialization exception

Ben La Monica created FLINK-10204:

             Summary: Job is marked as FAILED after serialization exception
                 Key: FLINK-10204
                 URL: https://issues.apache.org/jira/browse/FLINK-10204
             Project: Flink
          Issue Type: Bug
            Reporter: Ben La Monica

We have a long running flink job that eventually fails and is shut down due to an internal serialization exception that we keep on getting. Here is the stack trace:
2018-08-23 18:39:48,199 INFO org.apache.flink.runtime.executiongraph.ExecutionGraph - Job NAV Estimation (4b5463d76167f9f5aac83a890e8a867d) switched from state FAILING to FAILED.
java.io.IOException: Corrupt stream, found tag: 127
at org.apache.flink.streaming.runtime.streamrecord.StreamElementSerializer.deserialize(StreamElementSerializer.java:219)
at org.apache.flink.streaming.runtime.streamrecord.StreamElementSerializer.deserialize(StreamElementSerializer.java:49)
at org.apache.flink.runtime.plugable.NonReusingDeserializationDelegate.read(NonReusingDeserializationDelegate.java:55)
at org.apache.flink.runtime.io.network.api.serialization.SpillingAdaptiveSpanningRecordDeserializer.getNextRecord(SpillingAdaptiveSpanningRecordDeserializer.java:140)
at org.apache.flink.streaming.runtime.io.StreamTwoInputProcessor.processInput(StreamTwoInputProcessor.java:206)
at org.apache.flink.streaming.runtime.tasks.TwoInputStreamTask.run(TwoInputStreamTask.java:115)
at org.apache.flink.streaming.runtime.tasks.StreamTask.invoke(StreamTask.java:306)
at org.apache.flink.runtime.taskmanager.Task.run(Task.java:703)
at java.lang.Thread.run(Thread.java:748){code}

I think I have tracked down the issue to a mismatch in the serialization/deserialization/copy code in the StreamElementSerializer with regards to the LATENCY_MARKER.

The Serialization logic writes 3 LONGs and an INT. The copy logic only writes (and reads) a LONG and 2 INTs. Adding a test for the LatencyMarker throws an EOFException, and fixing the copy code causes the test to pass again.

I've written a unit test that highlights the problem, and have written the code to correct it.

I'll submit a PR that goes along with it.

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